Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00869 ATGGACGCAGGGAGTGTCAGAACTTATGTTATTGGTTCGGGCATTTGGCGAACCAAAGGCCTCATTGGCGGCAAATGGACTGATGCATATGATGGGAAGACCATTAAGGTTTACAACCCGGCTACCGGTGAGGAGGTGGCAGATGTTGCATGTATGGGTAAAAGGGAGACAAATGATGCTATCTCTTGTGCCTATGAAGCTTTTAAATCTTGGGGCAAGCTTACTGCCATTGAAAGGAGCAAACGCCTTAAAAGATGGTATGATTTATTGATTGCACACAAGGAAGAGCTTGGACAAATTATAACCTTAGAGCAAGGAAAACCATTTAAGGACGCTGTTGGTGAGGTTATTTTCGGGGCCAGCTACATTGATTTTTTTGCAGAAGAAGCGAAACGAGTCTATGGTGATATAATTCCATCAACTGTAGCTGATTGTCGGCTTTTGATCTTAAAGCAGCCCGTTGGAGTCGTTGGTGCAATTACACCTTGGAACTTTCCTTTGGCTATGATTGCTCGGAAGGTTGGTCCTGCTCTTGCATGTGGCTGTACTGTTGTTATAAAACCCTCTGAACTTACACCTCTCACAGCTTTAGCAGCAGCTGAGCTCTCCCTTCAGGCTGGAATCCCCCCTGGTGTTGTGAATGTGGTCATGGGAATTGCTCCAGAAATTGGGGATGCTTTACTTGTCAGCAAACAGGTAAGAAAGATAACATTCACTGGCTCAACAGCAGTGGGGAAGATGTTAATGGCTCGAGCTGCGGAGACTGTTAAAAAGGTGTCTCTGGAACTTGGTGGCAATGCACCATGCATTGTGTTTGATGATGCAGATATTGATATAGCAGTAAAAGGAACCCTTGCTGCAAAGTTCCGAAACACTGGGCAAACTTGTGTATGTGCCAACAGGATTTTTGTTCAAGAAGGTATATACGAGAAATTCGCTGCTGCTTTTTCTAGAGAAGTCCGCAATATGAAAGTTGGACATGGCTTTAGTGAAGGTGTGGTTCAGGTAGGTCCTCTCATCAATGAAGCAGCAGTTATCAAGGTTGAAACATTTATTCAAGATGCTGTCGCTAAGGGAGCGAAAGTTGTTCTGGGAGGTCAAAGGCATAGGCTGGGAATGACCTTTTATGAGCCTACAGTTCTTAAGGATGTCAACCATGATATGCTGATAGCCAGAGAGGAAGTATTTGGTCCTGTGGCACCCTTATTGCGGTTTAGAACTGAGGAGGAAGTAATTTCCCTTGCCAATGATACCAATGCAGGTTGGTTAGCTGCTTATGTATTCACTCAGAATGTTCAACGATCTTGGCGTATGACTGAATCTCTTGAATACGGCATTGTTGGTGTCAATGAAGGACTCATTTCTACCGAGGTAGCTCCATTTGGAGGCTTTAAACAGTCAGGGCTTGGTCGGGAAGGTTCAAAATATGGGATGGACGACTATCTGGAGGTAAGTGTGTTTCATAGATGCTCATCTAATGGATCTTAG 1488 44.42 MDAGSVRTYVIGSGIWRTKGLIGGKWTDAYDGKTIKVYNPATGEEVADVACMGKRETNDAISCAYEAFKSWGKLTAIERSKRLKRWYDLLIAHKEELGQIITLEQGKPFKDAVGEVIFGASYIDFFAEEAKRVYGDIIPSTVADCRLLILKQPVGVVGAITPWNFPLAMIARKVGPALACGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGIAPEIGDALLVSKQVRKITFTGSTAVGKMLMARAAETVKKVSLELGGNAPCIVFDDADIDIAVKGTLAAKFRNTGQTCVCANRIFVQEGIYEKFAAAFSREVRNMKVGHGFSEGVVQVGPLINEAAVIKVETFIQDAVAKGAKVVLGGQRHRLGMTFYEPTVLKDVNHDMLIAREEVFGPVAPLLRFRTEEEVISLANDTNAGWLAAYVFTQNVQRSWRMTESLEYGIVGVNEGLISTEVAPFGGFKQSGLGREGSKYGMDDYLEVSVFHRCSSNGS 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33613475 33623420 - BLOR10599 Blo02g00869 57099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00869 495 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 265 456 IPR016163 GO:0016620
Blo02g00869 495 Pfam Aldehyde dehydrogenase family 26 485 IPR015590 GO:0016491
Blo02g00869 495 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 15 486 - -
Blo02g00869 495 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 261 268 IPR029510 GO:0016491
Blo02g00869 495 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 32 481 IPR016162 GO:0016491
Blo02g00869 495 CDD ALDH_F5_SSADH_GabD 37 484 - -
Blo02g00869 495 SUPERFAMILY ALDH-like 11 485 IPR016161 GO:0016491
Blo02g00869 495 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 37 484 IPR010102 GO:0009013|GO:0009450
Blo02g00869 495 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 15 486 - -
Blo02g00869 495 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 289 300 IPR016160 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00869 K17761 SSADH; succinate-semialdehyde dehydrogenase, mitochondrial [EC:1.2.1.24] - twl:119988855 762.296
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00869 Blo-Chr2:33613475 Blo15g00791 Blo-Chr15:27024539 0 dispersed
Blo12g00082 Blo-Chr12:5523264 Blo02g00869 Blo-Chr2:33613475 1.39E-65 dispersed
Blo16g00906 Blo-Chr16:36928002 Blo02g00869 Blo-Chr2:33613475 5.42E-61 dispersed
Blo02g00869 Blo-Chr2:33613475 Blo01g00398 Blo-Chr1:4515469 2.79E-107 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g890 Blo02g00869 . . . . . . Bma12g00367 . . . . . . . . Cpe15g00387 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo08g00284 . 16 502 Aldehyde Dehydrogenase Gene Family AT3G24503 73.2 9.2e-216 746.5
Blo16g00815 . 70 586 Aldehyde Dehydrogenase Gene Family AT3G24503 66.4 8.7e-198 686.8
Blo16g00811 . 38 523 Aldehyde Dehydrogenase Gene Family AT3G24503 67.4 4.8e-188 654.4
Blo14g00484 . 5 444 Aldehyde Dehydrogenase Gene Family AT3G24503 65.3 1.8e-187 652.5
Blo01g00700 . 3 464 Aldehyde Dehydrogenase Gene Family AT3G24503 68.7 4.5e-186 647.9
Blo01g00702 . 3 468 Aldehyde Dehydrogenase Gene Family AT3G24503 66.0 2.7e-175 612.1
Blo16g00812 . 1 423 Aldehyde Dehydrogenase Gene Family AT3G24503 69.1 2.8e-172 602.1
Blo01g00398 CCT,ECH 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 4.7e-159 558.1
Blo16g01155 . 65 567 Aldehyde Dehydrogenase Gene Family AT3G24503 52.6 1.3e-153 540.0
Blo01g00398 CCT,ECH 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 77.0 4.7e-250 860.5
Blo16g01155 . 37 567 Aldehyde Dehydrogenase Gene Family AT3G48000 73.9 1.0e-236 816.2
Blo08g00284 . 5 502 Aldehyde Dehydrogenase Gene Family AT3G48000 56.6 2.3e-164 575.9
Blo16g00815 . 86 586 Aldehyde Dehydrogenase Gene Family AT3G48000 53.3 1.9e-158 556.2
Blo16g00811 . 38 523 Aldehyde Dehydrogenase Gene Family AT3G48000 52.3 3.3e-150 528.9
Blo01g00700 . 3 464 Aldehyde Dehydrogenase Gene Family AT3G48000 54.8 7.2e-150 527.7
Blo11g00908 CCT,ECH 1 361 Aldehyde Dehydrogenase Gene Family AT3G48000 63.0 3.5e-144 508.8
Blo01g00702 . 3 464 Aldehyde Dehydrogenase Gene Family AT3G48000 53.2 2.8e-141 499.2
Blo16g00812 . 1 423 Aldehyde Dehydrogenase Gene Family AT3G48000 54.1 1.3e-138 490.3
Blo14g00484 . 18 444 Aldehyde Dehydrogenase Gene Family AT3G48000 50.5 8.3e-138 487.6
Blo01g00398 CCT,ECH 1 384 Aldehyde Dehydrogenase Gene Family AT1G23800 76.2 1.9e-171 599.0
Blo16g01155 . 46 421 Aldehyde Dehydrogenase Gene Family AT1G23800 74.5 1.6e-165 579.3
Blo16g00815 . 65 439 Aldehyde Dehydrogenase Gene Family AT1G23800 51.7 1.3e-103 373.6
Blo08g00284 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.4 1.2e-101 367.1
Blo16g00811 . 43 373 Aldehyde Dehydrogenase Gene Family AT1G23800 52.0 8.9e-92 334.3
Blo01g00700 . 3 308 Aldehyde Dehydrogenase Gene Family AT1G23800 55.9 2.0e-91 333.2
Blo01g00702 . 3 314 Aldehyde Dehydrogenase Gene Family AT1G23800 53.2 6.2e-85 311.6
Blo11g00908 CCT,ECH 1 212 Aldehyde Dehydrogenase Gene Family AT1G23800 60.7 1.7e-82 303.5
Blo16g00812 . 1 267 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 3.5e-80 295.8
Blo16g00548 . 273 756 Aldehyde Dehydrogenase Gene Family AT4G34240 68.8 3.9e-196 681.4
Blo12g01125 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.0 1.1e-177 620.2
Blo12g01125 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.5 4.0e-180 627.9
Blo16g00548 . 344 753 Aldehyde Dehydrogenase Gene Family AT1G44170 68.0 8.4e-162 567.0
Blo16g00062 . 67 461 Aldehyde Dehydrogenase Gene Family AT1G44170 52.4 8.3e-117 417.5
Blo08g00098 . 1236 1594 Aldehyde Dehydrogenase Gene Family AT1G44170 51.5 4.6e-99 358.6
Blo16g00062 . 1 460 Aldehyde Dehydrogenase Gene Family AT4G36250 63.1 2.7e-180 628.6
Blo08g00098 . 1236 1596 Aldehyde Dehydrogenase Gene Family AT4G36250 57.3 1.4e-123 440.3
Blo02g00869 . 1 484 Aldehyde Dehydrogenase Gene Family AT1G79440 76.4 6.1e-218 753.8
Blo15g00791 . 105 637 Aldehyde Dehydrogenase Gene Family AT1G79440 66.6 1.3e-204 709.5
Blo15g00637 . 181 439 Aldehyde Dehydrogenase Gene Family AT1G79440 77.2 1.7e-114 410.2
Blo15g00639 . 1 238 Aldehyde Dehydrogenase Gene Family AT1G79440 77.7 2.9e-103 372.9
Blo05g00732 . 37 456 Aldehyde Dehydrogenase Gene Family AT2G14170 62.2 2.6e-156 549.3
Blo13g00203 . 71 300 Aldehyde Dehydrogenase Gene Family AT2G14170 69.8 2.9e-83 306.6
Blo13g00204 . 42 242 Aldehyde Dehydrogenase Gene Family AT2G14170 54.0 6.8e-48 189.1
Blo13g00042 BCT 812 1278 Aldehyde Dehydrogenase Gene Family AT1G74920 81.4 7.4e-234 806.6
Blo15g00282 BCT 102 561 Aldehyde Dehydrogenase Gene Family AT1G74920 80.7 1.2e-226 782.7
Blo13g00042 BCT 816 1278 Aldehyde Dehydrogenase Gene Family AT3G48170 80.1 1.4e-232 802.4
Blo15g00282 BCT 99 563 Aldehyde Dehydrogenase Gene Family AT3G48170 79.1 4.3e-229 790.8
Blo16g00906 . 1 459 Aldehyde Dehydrogenase Gene Family AT2G24270 88.2 9.8e-242 832.8
Blo16g00194 . 26 460 Aldehyde Dehydrogenase Gene Family AT5G62530 82.1 4.3e-214 741.1
Blo12g00082 . 3 588 Aldehyde Dehydrogenase Gene Family AT3G66658 82.9 7.7e-294 1006.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004697 3 1 1 3 3 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 3 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00869 Blo_Chr02 FPKM 0.453689 1.565433 0.572407 0.192847 1.895663 1.911675 3.03818 1.231616 0.0 0.428225