Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00897 ATGCCTATCATCGAAGAAACCCTCCCGGCGGGATACGTTGGGAGGGAAGAAACCCTGAAGGCGGGATACGCCGGAAGGAGAGGACCCTTGAAGGCAGGATACGCCCGAAAGGGGACGAAAAAGGGACTTGGAGGGCGGATGGGTAGCGGAACTAGTCTGCGGCTAGGCGAAGCCCCCAACCTTGACGGAAACGGGGACCTAGTTGCAAATAAGAATTTAAGTTGCGATTTTGTTGTCGATCGAGGATATAGTGATTGTTTAGTGAGGCCATTAGCGTTGATGCGCATGGCTGCTTATGTGTTCTCGATTGATGTCGGAACCGATTGTTGTGCATTGATGTATACAATGCTAGTGAAGCTTTCAGTTGATGTCAGAGCTACTTACAGAGGTGAATTTTTAACAGATGAGGAACTTGGACTGATCGAGGATTTTCCCGAAGTAGAAGAGCATACAGAGGGAAATATCGAATATGTCAATGATGGAACCTTAAATGGCGTTGGGGTTTCCATGTCAGGCCATACTCGCACCTCTGAAGCTTGGTTCTTCAGCGTCGTACTCTTCTTCACTCTCACTGTCCTCGAGTTCATCTGCTTTTTCTTCCCTCTGAAAGCAACCTCGGTGGGAAGAAATGTTTCCTCCTCGGATTTGGCTGTAGATTTATCGTTAGAAAAACTTTTCATCGCTATTTTGATTGACTTTATCGATTTGCAGGACAAAACAAAATTTTCAAGAATCAAAAAGCGGAATCAAGGGAAGCTGTTTGTTAAATGTTCAGTGAACGCCAAGTCCCCCAAGACACAGCTGGCAGTTCGCATTGGTGTTCTGGGTGCTAGTGGATATACTGGGTCAGAGATTGTTCGGCTTCTAGCGAATCATCCACACTTTGGTATTTCTCTCATGACTGCAGATAGAAAAGCTGGCCAATCGTTTGGATCAGTGTTTCCTCATTTGATCACACAAGATCTGCCTGATTTGGTCGCTATTAAAGATGCCAATTTTTCTGAAGTGGATGCTGTATTTTGTTGCTTGCCACATGGAACTACACAGGAGATTATCAAAGCCCTTCCCAAAGGACTAAAGATTGTGGATCTTTCTGCTGATTTCCGTCTGCGAGATGTATCTGAGTATGAGGAGTGGTATGGGCAGGCACACAAAGCACCGGATTTACAGAAAGAAGCTGTATACGGGTTGACAGAGATTTTGAGGAAGGAAATTAAGGACGCTCGCCTAGTTGCTAACCCGGGTTGTTATCCGACCTCCATTCAGCTTCCTCTTGTTCCATTAATAAAGGCTAATTTAATTCAACACAGTAATATCATAATTGATTCCAAATCCGGCGTGAGTGGAGCTGGGCGTGGTGCCAAGGAGGCAAACCTATACACTGAAATAGCTGAAGGCATTTATTCCTATGGTATTACTAGGCATCGCCATGTTCCAGAAATCGAGCAGGGACTTGCTGATGCTGCAAATTCAAAAGTAACAGTGAGTTTCACTCCACACCTAATGCCAATGAGTCGAGGTATGCAATCAACCATATATGTGGAGATGGCGTCAGGAGTGACGGCGGATGAGTTGTATCAACACTTAAAAGTTTGCTATGAGGAAGAAGAATTTGTAATTGTCTTGGAGAAAGGTGTGGCCCCGCGTACCCAAAATAGTAGGGGATCAAATTATTGTCTCATTAATGTATTCCCAGATCGTATTCCAGGAAGAGCAATTATTATTTCTGCAATCGATAATCTGGTGAAGGGAGCATCGGGGCAAGCTTTGCAAAATCTGAATGTCATGATGGGATTCCCAGAAACAACGGGGCTTCTCTACCAACCCTTTTGGGATAAGACGATTCTGCTTTTGACTTTTCTCTTTCTCTATCGAAGAACTGGCTTAGCTCTGTTTAATCCGGCTAAATTTTGGCGTTATCAAAGTAAACACCATATGGAGCTGGGTCATGAAGAACAGATCGGTAATGGAGAAATGGAGAGAAGACCCTCAACCGATGCCCTCATGGAGCCAAGAATTTCCCGACCCCAATTTCCGGGCATGGTGAGAAAAAGAGCCTACATATTTGATGGATTTGGGAAATATTACAACAAAGAATGGGATCTAATCGAAGGCAGAGGCAACGAGTTCTGCTGGTATCACGTCGAACTTCCAAAAGGAAATCAAAAACTTACTCAATCTGCACAATACCTCATTGATGCTCTTTGCCCCCCATTGAAGCTTCAAGACATTCTCTCCCTAGTCAGCAATGGACCCTTCTGTGGGCATGTAGATGGAGCTCTTGTTTTCAGAGTTAACTCACCTGGGCCTCCCTCTAGTGATTTTACCTTCCGGATAGCGGCTAGAGTGACTGAAAATTCTGTGATTACCATGTCTTTGGGTCGGGTTCCGAGATTAGGCTTCTCGCCGATGGGCCAGTCGCTGCTGTTTGAGGTTCCGAGTGTGGAGAGCCCTTCTCATCGGAGAGGAGAAAAAAGGGAAGGAGATGGGATTGTTATAAGAGAACATGTTCTTGAATTTCTGTTGACGATGAATCATTCCGAGGAAGCTGATAATCCGGTCCCAAAATCGGTCTCGAATTTGGTGGTTCATGTTATGGACACCCATGTGGATCATCTTCAAGATGTTGTGACTAAACTTGAGATGGAGTTGGATTCTGTCGAACTTGAAATGGATAGAGGGGGATTTGCTTCAAAGAAACAAATGCTAGACGATCGTAGATTTCCCAAAATGCATCTTAATCTGCAGCGTCTTCTTCAGGTGATTGCATACGGGGAACAAGTTTTTCCGCGAGTCAAAGAAAAATGTGCGACAAAACGTTGGTTTGCAAACGAAGACATATGTTCTCTTGAAGAGCTGATAGGACGGTTAAGAAGACTGAAAGAAAACGTGGGATTTTTAGCAAATCGCATCACCGCGATTCAGGCCGGTCTAGATAGCTGGCAATCGGAGCAAATCAATAAGAAACTCTATTATCTTTCCTTTCTTTCCATCATCTTCCTTCCCCTATCAGTGATCACGGGAGTGTTTGGCATGAACGTGGGGGGAGTTCCGTGGACGCAACAGAAAGACCCGACATTGAAAGACGGGATAATTGATTTCAATAGAGCTGATGTAGAGAATAATCGGGGGCGTGTATATTACTATGCTGCTATCTACCAACTGCTTTTGACTCCAGCCATGGACATTCTTTAG 3195 44.66 MPIIEETLPAGYVGREETLKAGYAGRRGPLKAGYARKGTKKGLGGRMGSGTSLRLGEAPNLDGNGDLVANKNLSCDFVVDRGYSDCLVRPLALMRMAAYVFSIDVGTDCCALMYTMLVKLSVDVRATYRGEFLTDEELGLIEDFPEVEEHTEGNIEYVNDGTLNGVGVSMSGHTRTSEAWFFSVVLFFTLTVLEFICFFFPLKATSVGRNVSSSDLAVDLSLEKLFIAILIDFIDLQDKTKFSRIKKRNQGKLFVKCSVNAKSPKTQLAVRIGVLGASGYTGSEIVRLLANHPHFGISLMTADRKAGQSFGSVFPHLITQDLPDLVAIKDANFSEVDAVFCCLPHGTTQEIIKALPKGLKIVDLSADFRLRDVSEYEEWYGQAHKAPDLQKEAVYGLTEILRKEIKDARLVANPGCYPTSIQLPLVPLIKANLIQHSNIIIDSKSGVSGAGRGAKEANLYTEIAEGIYSYGITRHRHVPEIEQGLADAANSKVTVSFTPHLMPMSRGMQSTIYVEMASGVTADELYQHLKVCYEEEEFVIVLEKGVAPRTQNSRGSNYCLINVFPDRIPGRAIIISAIDNLVKGASGQALQNLNVMMGFPETTGLLYQPFWDKTILLLTFLFLYRRTGLALFNPAKFWRYQSKHHMELGHEEQIGNGEMERRPSTDALMEPRISRPQFPGMVRKRAYIFDGFGKYYNKEWDLIEGRGNEFCWYHVELPKGNQKLTQSAQYLIDALCPPLKLQDILSLVSNGPFCGHVDGALVFRVNSPGPPSSDFTFRIAARVTENSVITMSLGRVPRLGFSPMGQSLLFEVPSVESPSHRRGEKREGDGIVIREHVLEFLLTMNHSEEADNPVPKSVSNLVVHVMDTHVDHLQDVVTKLEMELDSVELEMDRGGFASKKQMLDDRRFPKMHLNLQRLLQVIAYGEQVFPRVKEKCATKRWFANEDICSLEELIGRLRRLKENVGFLANRITAIQAGLDSWQSEQINKKLYYLSFLSIIFLPLSVITGVFGMNVGGVPWTQQKDPTLKDGIIDFNRADVENNRGRVYYYAAIYQLLLTPAMDIL 1064
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34652310 34671251 + BLOR10627 Blo02g00897 57127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00897 1064 Gene3D Magnesium transport protein CorA, transmembrane region 855 981 - -
Blo02g00897 1064 Coils Coil 950 970 - -
Blo02g00897 1064 Gene3D - 271 598 - -
Blo02g00897 1064 Pfam Semialdehyde dehydrogenase, NAD binding domain 271 408 IPR000534 GO:0016620|GO:0051287
Blo02g00897 1064 Coils Coil 870 890 - -
Blo02g00897 1064 ProSitePatterns N-acetyl-gamma-glutamyl-phosphate reductase active site. 411 427 IPR023013 GO:0003942
Blo02g00897 1064 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 986 1022 IPR045863 -
Blo02g00897 1064 Gene3D Dihydrodipicolinate Reductase; domain 2 414 580 - -
Blo02g00897 1064 TIGRFAM argC: N-acetyl-gamma-glutamyl-phosphate reductase 270 611 IPR000706 GO:0003942|GO:0006526
Blo02g00897 1064 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 416 580 - -
Blo02g00897 1064 Pfam CorA-like Mg2+ transporter protein 851 1023 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Blo02g00897 1064 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 270 441 IPR036291 -
Blo02g00897 1064 Gene3D Magnesium transport protein CorA, transmembrane region 982 1053 - -
Blo02g00897 1064 Pfam Semialdehyde dehydrogenase, dimerisation domain 425 583 IPR012280 GO:0008652|GO:0016620|GO:0046983
Blo02g00897 1064 Hamap N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 270 606 IPR000706 GO:0003942|GO:0006526
Blo02g00897 1064 SUPERFAMILY CorA soluble domain-like 673 976 IPR045861 -
Blo02g00897 1064 PANTHER OS08G0130000 PROTEIN 649 1033 - -
Blo02g00897 1064 SMART Semialdhyde_dh_3 271 408 IPR000534 GO:0016620|GO:0051287
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00897 - - K00145 tcc:18608166 665.611
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00897 Blo-Chr2:34652310 Blo19g00214 Blo-Chr19:10709787 5.96E-24 dispersed
Blo14g00646 Blo-Chr14:12870371 Blo02g00897 Blo-Chr2:34652310 5.51E-20 dispersed
Blo17g00765 Blo-Chr17:24366795 Blo02g00897 Blo-Chr2:34652310 8.97E-08 dispersed
Blo02g00897 Blo-Chr2:34652310 Blo02g00898 Blo-Chr2:34694673 2.48E-28 tandem
Blo01g01015 Blo-Chr1:30886960 Blo02g00897 Blo-Chr2:34652310 1.67E-27 transposed
Blo02g00721 Blo-Chr2:23061401 Blo02g00897 Blo-Chr2:34652310 1.47E-31 transposed
Blo06g00327 Blo-Chr6:19083207 Blo02g00897 Blo-Chr2:34652310 3.76E-24 transposed
Blo08g00439 Blo-Chr8:8850045 Blo02g00897 Blo-Chr2:34652310 4.65E-28 transposed
Blo10g00533 Blo-Chr10:13641652 Blo02g00897 Blo-Chr2:34652310 2.15E-25 transposed
Blo15g00618 Blo-Chr15:15443501 Blo02g00897 Blo-Chr2:34652310 4.25E-18 transposed
Blo16g00375 Blo-Chr16:12374952 Blo02g00897 Blo-Chr2:34652310 1.82E-26 transposed
Blo02g00897 Blo-Chr2:34652310 Blo03g00042 Blo-Chr3:1753017 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g862 Blo02g00897 . . . . . . . . . . . . . . . . . . . . . . . Cla10g00937 Cam10g0958 Cec10g0996 Cco10g0955 Clacu10g0982 Cmu10g1767 Cre10g1141 Cone12ag1008 . Cone3ag1072 Cone10ag1085 . . . . . . . . . . . . . Cmo04g00443 . . . . . . Cpe01g00372 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010951 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00897 Blo_Chr02 FPKM 7.609691 8.731414 4.010515 3.871521 5.313579 4.61228 4.25148 9.355685 8.167627 7.900356