Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00917 ATGAGAGAGTGCATCTCCATCCACATTGGTCAGGCCGGTATTCAGGTCGGAAATGCCTGCTGGGAGCTTTACTGTCTCGAGCACGGTATCCAGGTACCTTTCTTTATCCTCGCTGCGACTGGACTTATTTTTATCGCATTGTTCCTTTTCAAACTGTTGGTTTTAATGCTTAATGAATCCCCTGACAAGACTGTTGGTGGGGGTGATGATGCCTTTAACACCTTTTTCAGTGAGACTGGTGCAGGCAAACATGTCCCTCGCGCTGTATTTGTTGATCTTGAGCCCACAGTTATTGACGAGGTGAGGACTGGAGCTTACCGCCAGCTCTTCCACCCGGAGCAGCTTATCAGTGGCAAGGAAGATGCTGCCAACAATTTTGCCCGTGGTCATTATACTGTTGGGAAGGAAATTGTTGACCTCTGCTTGGACCGAATCAGGAAGCTTGCTGATAACTGCACTGGTCTTCAAGGGTTCCTTGTTTTCAATGCTGTTGGTGGTGGCACTGGCTCTGGGCTTGGCTCACTCCTTTTGGGACGTTTATCTGTTGACTATGGAAAGAAATCCAAGCTTGGTTTCACCGTCTGCCCCTCCCCACAGCACACTGATGTTGCTGTGCTGCTGGACAATGAGGCCATTTATGATATTTGCAGGCGCTCCCTTGACATTGAGAGACCCACCTACACTAACCTCAATCGCCTAGTTTCTCAGGTGATTTCTTCATTGACTGCCTCTCTAAGGTTTGACGGTGCCTTGGACGTAGATGTTACTGAATTCCAAACCAATTTGGTTCCTTACCCAAGAATCCACTTCATGCTTTCGTCATATGCACCTGTCATTTCTGCTGAGAAGGCCTACCATGAACAACTTTCAGTTGCTGAAATTACTAACAGTGCCTTTGAACCCTCATCCATGATGGCCAAGTGTGATCCACGCCATGGCAAGTACATGGCATGCTGTCTAATGTACCGTGGCAATGTTGTACCCAAGGATGTCAATGCGGCAATTGCCACCATCAAGACCAAGCGCACAATTCAATTTGTTGACTGGTGTCCCACTGGATTCAAGTATGGCATCAACTACCAGCCACCAACTGTTGTCCCAGGGGGCGACCTTGCCAAGGTCCAGAGGGCTGTTTGTATAATTTCCAACTCCACCAGTGTTGCAGAGGTGTTCTCTCGCATTGATCACAAATTTGACCTCATGTATGCCAAGAGAGCTTTTGTGCACTGGTATGTGGGCGAGGGAATGGAGGAGGGAGAGTTCTCTGAAGCCCGTGAGGATCTTGCTGCTCTGGAGAAAGATTACGAGGAGGTTGGTGCCGAGTCTGGCGAAGTAGATGACGAAGACGTGGAGTATTGA 1359 48.64 MRECISIHIGQAGIQVGNACWELYCLEHGIQVPFFILAATGLIFIALFLFKLLVLMLNESPDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLGRLSVDYGKKSKLGFTVCPSPQHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALDVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGNVVPKDVNAAIATIKTKRTIQFVDWCPTGFKYGINYQPPTVVPGGDLAKVQRAVCIISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESGEVDDEDVEY 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35356766 35359019 - BLOR10647 Blo02g00917 57147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00917 452 Gene3D Tubulin/FtsZ, GTPase domain 1 271 IPR036525 -
Blo02g00917 452 PRINTS Tubulin signature 118 129 IPR000217 GO:0005874|GO:0007017
Blo02g00917 452 PRINTS Tubulin signature 176 197 IPR000217 GO:0005874|GO:0007017
Blo02g00917 452 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Blo02g00917 452 PRINTS Tubulin signature 76 95 IPR000217 GO:0005874|GO:0007017
Blo02g00917 452 PRINTS Tubulin signature 131 155 IPR000217 GO:0005874|GO:0007017
Blo02g00917 452 PRINTS Tubulin signature 157 175 IPR000217 GO:0005874|GO:0007017
Blo02g00917 452 PRINTS Tubulin signature 383 411 IPR000217 GO:0005874|GO:0007017
Blo02g00917 452 SMART Tubulin_4 72 249 IPR003008 GO:0005525
Blo02g00917 452 PANTHER TUBULIN ALPHA CHAIN 199 447 - -
Blo02g00917 452 PANTHER TUBULIN ALPHA CHAIN 1 33 - -
Blo02g00917 452 Pfam Tubulin/FtsZ family, GTPase domain 3 206 IPR003008 GO:0005525
Blo02g00917 452 PANTHER TUBULIN 199 447 IPR000217 GO:0005874|GO:0007017
Blo02g00917 452 PANTHER TUBULIN 1 33 IPR000217 GO:0005874|GO:0007017
Blo02g00917 452 PANTHER TUBULIN 61 199 IPR000217 GO:0005874|GO:0007017
Blo02g00917 452 SMART Tubulin_C_4 251 396 IPR018316 -
Blo02g00917 452 SUPERFAMILY Tubulin C-terminal domain-like 249 439 IPR008280 -
Blo02g00917 452 Coils Coil 421 441 - -
Blo02g00917 452 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 247 IPR036525 -
Blo02g00917 452 PANTHER TUBULIN ALPHA CHAIN 61 199 - -
Blo02g00917 452 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 165 171 IPR017975 GO:0005525|GO:0005874|GO:0007017
Blo02g00917 452 Pfam Tubulin C-terminal domain 266 395 IPR018316 -
Blo02g00917 452 CDD alpha_tubulin 2 438 - -
Blo02g00917 452 Gene3D Helix hairpin bin 387 439 IPR023123 -
Blo02g00917 452 Gene3D - 272 386 IPR037103 -
Blo02g00917 452 PRINTS Alpha-tubulin signature 324 345 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo02g00917 452 PRINTS Alpha-tubulin signature 350 363 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo02g00917 452 PRINTS Alpha-tubulin signature 184 195 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo02g00917 452 PRINTS Alpha-tubulin signature 363 382 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo02g00917 452 PRINTS Alpha-tubulin signature 111 124 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo02g00917 452 PRINTS Alpha-tubulin signature 171 183 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo02g00917 452 PRINTS Alpha-tubulin signature 425 441 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo02g00917 452 PRINTS Alpha-tubulin signature 18 33 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo02g00917 452 PRINTS Alpha-tubulin signature 143 151 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo02g00917 452 PRINTS Alpha-tubulin signature 388 404 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00917 K07374 TUBA; tubulin alpha - rcu:8268915 786.178
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00917 Blo03g00060 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00917 Blo-Chr2:35356766 Blo17g00080 Blo-Chr17:598165 0 dispersed
Blo02g00917 Blo-Chr2:35356766 Blo03g00060 Blo-Chr3:2213716 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g770 Blo02g00917 Blo03g00060 Bda06g01159 . Bpe07g00293 . . Bma12g00302 Cmo19g00553 Cmo11g01429 . . . . . Cpe04g00335 Cpe15g00428 . . . . . . . Cla02g00698 Cam02g0731 Cec02g0746 Cco02g0770 Clacu02g0742 Cmu02g0737 Cre02g1050 . . . . Lsi03g00600 Csa07g00669 . Cme01g00135 . . . . . . . . Sed07g1149 Cmo04g00462 Cmo16g00324 Cma11g01691 Cma19g00539 Car11g01152 Car19g00396 Cpe14g00253 Cpe01g00388 Bhi11g01102 Tan01g0605 Cmetu08g1396 . Hepe07g0394 Mch10g0408 . . . . . . . . Lsi03g01006 . Chy01g00146 Cme07g02211
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000221 6 4 6 6 4 5 8 5 5 5 5 5 8 5 5 9 5 12 9 5 5 4 4 5 5 4 5 6 3 5 168
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00917 Blo_Chr02 FPKM 2.8924 3.471654 6.060492 6.627325 4.660256 5.293387 6.475968 6.245892 6.206053 5.92744