Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00939 ATGGCTTTTGTTTCCGCCTTCTTCTCCGCCGAAACGGCGTCTCTAATGAACAAGCTCTCCTCCTCTTCGTCATTTAGGCTGCCGCTTCCATGCTCTCCCGCTAACTTGCAAATGGCGCGGACTGTGACCGTTGCCGCCTCGCCGAAGGCGACGACATCCGGACAGCGTGAGCTTCGAGGTATTATGAAGCCGAAAAGAGTCTCTCCTGAGATGCAGGCTGTCGTCGGAGTTCCAGAGATTTCTCGCACTCAGGCTCTCAAGCATATTTGGTCCCACATTAAGGAACATAATCTTCAGGATCCTGAAAACAAGAAGATCATAGTCTGTGACGAAAAGCTGAAGAAAATATTTGGAGAGAAAGACCGTGTGGGTTTTCTTGAAATTGCAGATTCCGAAGGAAACCAAAAGGACAAGGCCAAGGCAGATCAGAGGCAAGAGGCTAGACACTTAGGGCTTGGGAATGGAACACCCACCACCGTTTTTGCCCTTTTGGAGAGTCTCTGCCCTTTTGGAGACAAACTCCACCTTTTTTGGGAGTTCTTTGTTAGTTGTCCTGCATTCCCATGCACGGAACAACTTCATGTAAGCACGAAGGTATGGAATGAAGAGGAGCAGTTGATGAAAGATTTGCGCGTTGCGAATCTTGTGGTTGGCTAG 657 49.01 MAFVSAFFSAETASLMNKLSSSSSFRLPLPCSPANLQMARTVTVAASPKATTSGQRELRGIMKPKRVSPEMQAVVGVPEISRTQALKHIWSHIKEHNLQDPENKKIIVCDEKLKKIFGEKDRVGFLEIADSEGNQKDKAKADQRQEARHLGLGNGTPTTVFALLESLCPFGDKLHLFWEFFVSCPAFPCTEQLHVSTKVWNEEEQLMKDLRVANLVVG 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36379938 36393783 - BLOR10669 Blo02g00939 57169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00939 218 Gene3D SWIB/MDM2 domain 55 131 IPR036885 -
Blo02g00939 218 ProSiteProfiles SWIB/MDM2 domain profile. 60 138 IPR003121 -
Blo02g00939 218 PANTHER EXPRESSED PROTEIN-RELATED 5 129 - -
Blo02g00939 218 Pfam SWIB/MDM2 domain 64 129 IPR003121 -
Blo02g00939 218 SUPERFAMILY SWIB/MDM2 domain 57 129 IPR036885 -
Blo02g00939 218 SMART swib_2 61 138 IPR019835 -
Blo02g00939 218 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 5 129 - -
Blo02g00939 218 CDD SWIB-MDM2_like 66 125 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00939 - - - twl:120001755 164.466
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00939 Blo03g00081 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00939 Blo-Chr2:36379938 Blo12g00299 Blo-Chr12:17641989 2.76E-21 dispersed
Blo02g00264 Blo-Chr2:2541807 Blo02g00939 Blo-Chr2:36379938 1.48E-07 transposed
Blo02g00939 Blo-Chr2:36379938 Blo03g00081 Blo-Chr3:2715316 3.68E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g668 Blo02g00939 Blo03g00081 . . Bpe07g00266 . . Bma12g00272 . Cmo11g01405 . . . . . Cpe04g00313 Cpe15g00452 . . . . . . . . . . . . . . Cone12ag1057 Cone8ag1091 . . . Csa07g00700 . Cme01g00106 . . . . . Bpe05g00483 . . . . . Cma11g01711 Cma19g00564 Car11g01130 Car19g00424 . . . . . . . . . . . . . . . . . . Chy01g00116 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007982 0 1 2 2 2 1 2 1 1 1 0 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 0 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12048 PF02201 SWIB 4.00E-26 No_clan Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00939 Blo_Chr02 FPKM 0.395941 0.0 0.66131 0.695701 0.0 0.0 0.0 0.895984 0.710674 0.593779