Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00993 ATGCATCATGGAATGACGGACTACCGGCTACCGGCATCGACGATGTCGAATCTCTGGACCGATGAGACGTCGACGATGAACTCCTTCATCAGCTCGGATTTCTTAACATGCGACCCTTTCAAAACAGTATCTCTCTCACAGCCGTCGCCTACGGGGCGAACCTTCGGCCAAGAGACTCTGCAACACCGCCTTCAGGCTCTAATCGAAGGCGCTCACGAAAACTGGACCTATGCCATTTTCTGGCAGTGTTCTTATGATTTTTCCGGTACGTTGGTTTTAGGATGGGGAGACGGATATTACAAAGGCGAGTATAGAAAGAGAAAAGGGAAAGTGAAGATGACGATGACGTCTCCGGCGGAGCAAGAGCATCGAAAGAAAGTTCTCCGGGAGCTGAACTCGTTGATTTCAGGCTCTCCGACCACCGCAAACGACGTGTTGGACGAAGATGTGACCGATTCTGAGTGGTTCTTCTTGCTTTCAATGGCTCAATCGTTTGTCACCGGAGTTGGTTTACCCGGCCAGGCGTTTTTCAATATGACCACCTTTTGGGTTTCCGGAACCGACCGGCTGATTCTTTCGCCGTTCGATCGCGCTCGCCAGGGTCAGAGTTTTGGTCTGCAGACAATGGTTTGTGTACCGCTGGTGAACGGAGTCATTGAACTGGGTTCGACAGAGCTGATTCATCAGAGCTCCGATTTGGCGAATTCGATTAGCGTGCTGTTCGATTTCAGTAACGTCGAAGTCGGTTCTTGGCCGACGATGGAAGCTGGCAATGAAGACGAAACCGATCCGTCGGCGTTCTGGATCACTGACACGCTTACCGCCATGGACATGAATGCTCCGACGAAGCCAGTTGATTTCGAAAACCCTGCCTCGAGCACTTTAACGGGAAATCCAGAACCCGATCAACAGATGAAGTTGGAAACCGTGGAGATTGGGGATTTGGAAGAGAGTAAGAGGAGCTACACGCAGATCGTACCGGAGAAGAAAATCGAAAAGAATAAGAAATCTCCCATATCGTGCTGTTATAACGACGACGGGATGCTTTCGTTCACATCCAGCGTGATACTGCCATCTTCCAACGGAATGAAATCGGTGAATTCGAATCATTCCGATCCAGAACCTTCGGCCATTCGGGAAGTGGAGAGTTGCAGAGAAACAGAAGAGGAAAAACGCCCCCGGAAAAGAGGTCGGAAGCCGGCGAATGGAAGAGAAGAGCCTTTAAACCATGTGGAAGCGGAAAGACAACGCCGGGAAAAGCTGAATCAGAAATTCTACGCGCTACGCGCCGTCGTCCCAAACGTTTCAAAAATCGACAAAGCCTCCATCCTAAGCGACGCTGTTTCGTACATAAAAGACCTCGAAAAAAGGATTCATATGGCTGATTCAGAAAAAGAACAACTCGAACAGAAACTAAATCTCGCGAAGAAGAAAACCCATTTCAATCCAAACCAATCGTCTTCTCCTTCAGACGAGAACTCTGTCGAATCGTCTGAAATAGAGGTAGAGGTGAAGCTGATTGGTTCGGACGCCATGATCAGAATACAGTGCAGCAAGAAGAACCATCCAGCTGCGACATTAATGGAAGCTCTGAAAGCTCTGGATCTGGATATGCACCATGCCAGTGTTTCTGTGGTGAATGAGTTCATGATTCTTCAAGCAACAGTGAAAATGGGTAATAGATTATACTCTCAGGATCAGCTCAAAAGTGAACTTTTATCCAAAATAAGCAATACCGCGAAGGAAGGGGAGCAGCATTAG 1761 48.44 MHHGMTDYRLPASTMSNLWTDETSTMNSFISSDFLTCDPFKTVSLSQPSPTGRTFGQETLQHRLQALIEGAHENWTYAIFWQCSYDFSGTLVLGWGDGYYKGEYRKRKGKVKMTMTSPAEQEHRKKVLRELNSLISGSPTTANDVLDEDVTDSEWFFLLSMAQSFVTGVGLPGQAFFNMTTFWVSGTDRLILSPFDRARQGQSFGLQTMVCVPLVNGVIELGSTELIHQSSDLANSISVLFDFSNVEVGSWPTMEAGNEDETDPSAFWITDTLTAMDMNAPTKPVDFENPASSTLTGNPEPDQQMKLETVEIGDLEESKRSYTQIVPEKKIEKNKKSPISCCYNDDGMLSFTSSVILPSSNGMKSVNSNHSDPEPSAIREVESCRETEEEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKIDKASILSDAVSYIKDLEKRIHMADSEKEQLEQKLNLAKKKTHFNPNQSSSPSDENSVESSEIEVEVKLIGSDAMIRIQCSKKNHPAATLMEALKALDLDMHHASVSVVNEFMILQATVKMGNRLYSQDQLKSELLSKISNTAKEGEQH 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38538853 38540613 + BLOR10723 Blo02g00993 57223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00993 586 MobiDBLite consensus disorder prediction 375 414 - -
Blo02g00993 586 PANTHER TRANSCRIPTION FACTOR MYC2 337 577 - -
Blo02g00993 586 PANTHER TRANSCRIPTION FACTOR MYC2 49 271 - -
Blo02g00993 586 CDD bHLH_AtAIB_like 402 477 - -
Blo02g00993 586 Gene3D - 397 481 IPR036638 GO:0046983
Blo02g00993 586 MobiDBLite consensus disorder prediction 477 495 - -
Blo02g00993 586 SMART finulus 411 460 IPR011598 GO:0046983
Blo02g00993 586 MobiDBLite consensus disorder prediction 360 414 - -
Blo02g00993 586 PANTHER MYC 49 271 IPR045084 GO:0003700|GO:0006355
Blo02g00993 586 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 408 474 IPR036638 GO:0046983
Blo02g00993 586 PANTHER MYC 337 577 IPR045084 GO:0003700|GO:0006355
Blo02g00993 586 MobiDBLite consensus disorder prediction 360 374 - -
Blo02g00993 586 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 60 241 IPR025610 -
Blo02g00993 586 MobiDBLite consensus disorder prediction 476 497 - -
Blo02g00993 586 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 405 454 IPR011598 GO:0046983
Blo02g00993 586 Coils Coil 451 478 - -
Blo02g00993 586 Pfam Helix-loop-helix DNA-binding domain 409 455 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00993 K13422 MYC2; transcription factor MYC2 - vvi:100250607 594.734
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00993 Blo03g00858 CCT
Blo02g00993 Blo19g00189 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00993 Blo-Chr2:38538853 Blo03g00861 Blo-Chr3:34437532 0 dispersed
Blo05g00367 Blo-Chr5:4402259 Blo02g00993 Blo-Chr2:38538853 1.25E-15 dispersed
Blo06g00041 Blo-Chr6:985921 Blo02g00993 Blo-Chr2:38538853 1.62E-18 dispersed
Blo16g00325 Blo-Chr16:8400805 Blo02g00993 Blo-Chr2:38538853 8.76E-20 dispersed
Blo02g00993 Blo-Chr2:38538853 Blo03g00858 Blo-Chr3:34406074 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g671 Blo02g00993 . . . . . Bma07g00930 Bma14g00153 Cmo06g00657 Cmo16g01208 Cma02g01614 . Car02g01373 . Sed08g1916 Cpe14g00960 Cpe05g00176 Bhi11g00156 Tan01g2188 Cmetu06g1892 . Hepe06g1772 Mch10g1654 . Cla10g00159 Cam10g0160 Cec10g0170 Cco10g0168 Clacu10g0161 Cmu10g1010 Cre10g0420 Cone8ag0471 Cone12ag0465 . . Lsi07g01198 . Chy04g00093 Cme06g02473 Blo03g00858 Blo19g00189 Bda07g00099 Bda09g00724 Bpe08g00833 Bpe11g00336 . . Sed01g4108 Cmo02g01657 Cmo19g00251 Cma06g00648 Cma16g01157 Car06g00579 Car16g01097 . Cpe15g00214 Bhi05g00500 Tan07g1978 Cmetu04g2523 Lac11g2414 Hepe06g1020 . Lcy12g1947 Cla09g01129 Cam09g1183 Cec09g1195 Cco09g1216 . . Cre09g1145 . Csa03g04609 Chy06g02143 Cme04g00117
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001444 2 2 4 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 3 1 2 2 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12053 PF14215 bHLH-MYC_N 2.30E-50 CL0161 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00993 Blo_Chr02 FPKM 4.97491 3.721455 9.806092 9.427938 21.484045 20.448076 23.763697 7.321173 8.507213 7.894802