Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01002 ATGGAGTGTAACATGTGTTTTGTTTTGGAAATGAGTGACATAACATCAAAGATTTATAAGAAGAAGATCAAACCTGAACCATCAGGTGTTTTAGTTGTAGATCAAGACCCTGTATGGCAGAAACCTGTGAATCTTGAAGAAGAAAATGCTGATGATTCCCCCGATGAGGAAAAACCCCTAATTGATGAAGATATTGAGGTCAAGAGAATGAGGAGGCTAGAAGAATTGAGAGCTAGGCGTCCATATAATGCCATATCTGAGGATGGAAGTGGTTGGGTTTCACTCTCTCTGAAACCCTCCATTTCTAGTATTCCAGATTTGGATATGTCTCCACCTCGTAAAGATAGAGTTAGAAAAGATACACCTTCTCCTGAACCGAGGGTGAAGCATTTAGATTCAAGAAGGGAAGGAGAGGATTTGTCACCTCTTCGGCAGAAGCAGCAGTGCCATCACAGTCCAGCACCTGACACTAGAGGAGAGGATTTTTCTCCGCCTCGCAGACGAAAGGTTCGATATGATACTCCTTCGCCAGGAAGTGAATTGGAACATTTGGAATCTAGAAAAAAGGATGATGACTTATCACCTCCTAGGCAAAGAAGATATCGCCATAGCTCATCATTTGAACCTGTTCAGAGTTCTGAAATTTCCCTCTCTCATCATCAGACATCAAATCTTAATCAACAAAGACAGGACAATACACCCGAGTTAAGTGACATTTCTTCTCTTCGATTAGGACGTAATGTATCAGATATTTCACCACCGAGGAAAGGCAGGAAGAATGACAGGAGACCCAGGTCACCTGAACTATCTGCTCGTGGACTTACAACTGAAACTGATGCTTCAAGAATATCTCTGCCACCAGACCTGTCCCCACCCAGGAAAATCCAGAAGAAGCTAGCCCCTCCAGCTTCCTTGAAAGAGCAGCCAAAGACTGGTTTGATAACTGGTCGAGAAATCAGGAAAGAGATTGCTAAAACTAAGAAAGATGATTGGTTAAGGTTCAAAGAGATGGATCCGTCTATAAGCGGTGTGGGAGCTGAACCTATTTATCGGGATAAGATTAAAGGAGAACGCATTTCAAAGGAGGAGTTCTTGAAATCACGACAGAAAGCAGAAGAAAAACCCAAGGAGATAACACTGGAATGGGGCATGGGTTTGGCTCAAAAGCGGGAAGCTGAAGCAAGGATTCAAGAGTTAGAACTTGAGAAAGACAAACCATTTGCACGGACCAAAGATGACCCAGAACTTGACAAATTGCTAAAGGACAGAGTGAGATGGGGTGATCCTATGGCACATTTGGTGAAGAAACAACATCATGATCCAGTTCTGCCAAATCTAGGGGAAAGTGAGAAGATGCAGGAATCCGGGTTTGTTATTCCACAGGAAATTCCTGCTCATAGTTGGCTGAAAAGAGGATTTGATGCTGCACCTAATCGATATGGCATAAGACCGGGAAGACATTGGGATGGAGTCGATCGAAGCAATGCGGCACTGATTGCTTCTCTGGTTGCCTCGAGTGTTACCCGGCACTTGCCTATGATGTTCGGTGAAGTGCTTTTCTTCGCCGGAGCTATTATCAATGGCTTTGCTAATGCTATTTGGATGCTTATTGTTGGCCGGATGTTGTTCGGATTCGATATCGGGTTTACTATTTAG 1656 43.6 MECNMCFVLEMSDITSKIYKKKIKPEPSGVLVVDQDPVWQKPVNLEEENADDSPDEEKPLIDEDIEVKRMRRLEELRARRPYNAISEDGSGWVSLSLKPSISSIPDLDMSPPRKDRVRKDTPSPEPRVKHLDSRREGEDLSPLRQKQQCHHSPAPDTRGEDFSPPRRRKVRYDTPSPGSELEHLESRKKDDDLSPPRQRRYRHSSSFEPVQSSEISLSHHQTSNLNQQRQDNTPELSDISSLRLGRNVSDISPPRKGRKNDRRPRSPELSARGLTTETDASRISLPPDLSPPRKIQKKLAPPASLKEQPKTGLITGREIRKEIAKTKKDDWLRFKEMDPSISGVGAEPIYRDKIKGERISKEEFLKSRQKAEEKPKEITLEWGMGLAQKREAEARIQELELEKDKPFARTKDDPELDKLLKDRVRWGDPMAHLVKKQHHDPVLPNLGESEKMQESGFVIPQEIPAHSWLKRGFDAAPNRYGIRPGRHWDGVDRSNAALIASLVASSVTRHLPMMFGEVLFFAGAIINGFANAIWMLIVGRMLFGFDIGFTI 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38974730 38979657 + BLOR10732 Blo02g01002 57232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01002 551 MobiDBLite consensus disorder prediction 205 247 - -
Blo02g01002 551 MobiDBLite consensus disorder prediction 89 103 - -
Blo02g01002 551 Pfam Sugar (and other) transporter 497 549 IPR005828 GO:0016021|GO:0022857|GO:0055085
Blo02g01002 551 PANTHER BUD13 HOMOLOG 17 495 - -
Blo02g01002 551 MobiDBLite consensus disorder prediction 43 63 - -
Blo02g01002 551 SUPERFAMILY MFS general substrate transporter 497 549 IPR036259 -
Blo02g01002 551 MobiDBLite consensus disorder prediction 252 268 - -
Blo02g01002 551 MobiDBLite consensus disorder prediction 77 316 - -
Blo02g01002 551 MobiDBLite consensus disorder prediction 109 204 - -
Blo02g01002 551 Pfam Pre-mRNA-splicing factor of RES complex 348 495 IPR018609 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01002 K13106 BUD13, CWC26; pre-mRNA-splicing factor CWC26 - zju:107430445 532.717
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01002 Blo-Chr2:38974730 Blo15g00337 Blo-Chr15:4032013 0 dispersed
Blo02g01002 Blo-Chr2:38974730 Blo01g00826 Blo-Chr1:13141143 2.64E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g632 Blo02g01002 . . Bda08g00618 Bpe05g00538 . . . Cmo06g00861 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0618 Cone9ag0620 . . . . . . . . . . . . . . . Cma06g00839 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004758 1 4 2 1 1 1 2 1 1 2 1 1 3 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g01002 Blo_Chr02 FPKM 4.008598 5.631172 10.369402 10.425949 12.732053 12.040187 10.297186 7.097414 6.980529 8.277292