Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01005 ATGAAAATAAAGCTACACTTCAAACACAGTGTGAAGCTGGTGGAGCAGGAGTTGTGGCAGCGAGAAGAGAAGGGATTGATTGGTATTCTTCCTGTTCGAGATGCTGCTGAGGCAACAACAATTGACCCTGTTCTATCTCAAGGAGTAGGAAGTGAGTCTGGAGAACGGAGCTCAAGAATTCAAGCTGGCACCGCAGATTCTGAAAGACTTGATGGGAAAAATCAGCAGGAAGCCATTCATTGGCATACGAGGGGAGTTGCTGCTCGTGCCTTACATCTATCTAGAGGAGTGGAGAAACCAAGTGGTAGGGTAACTTATACTGTGGTCCTTGAAGGTTTGTGCAGATTCAGTGTCCAGGAACTCAGCACCAGAGGAACATATTATGTTGCACGGATATCTCCTCTTGAAATGACAAAGGCAGAGATGGAACAGGTGGAGCAAGATCCTGACTTCACTTCATTGTCTCGCCAGTTCAAAGCCACTGCCATGGAGCTGATTTCTGTTCTTGAGCAGAAGAAAAAAACTGGAGGAAGAACAAAGGTTCTTTTGGAGACAGTTCCAGTTCATAAATTGGCTGACATTTTTGTTGCTAGCTTTGAAATAAGCTTTGAGGAACAGTTGTCCATGTTGGATTCGATAGATTTGAAAGTAAGACTTTCAAAAGCTATGGAGTTAGTTGACAGACATTTACAGTCTATACGCGTTGCTGAAAAGATAACTCAAAAGGTTGAGGGCCAGCTATCTAAATCGCAGAAAGAGTTTCTGTTGCGCCAGCAGATGAGAGCAATAAAAGAGGAGCTTGGCGACGATGATGATGAGGATGACTTGGCTACTTTAGAAAGAAAGATGCAAAGTGCTGGGATGCCTTCAAATATCTGGAAGCATGCACAAAGGGAGTTAAGGAGCCTGAAAAAGATGCAGCCTCAGCAGCCAGGATACAACAGTTTACGGGTATACCTGGAGCTTCTTGCTGATCTGCCTTGGATAAAGGCCACTGAGGAACATGAGTTAGACTTGAAAGCTGCAAAATTACGTCTTGACAGTGATCATTATGGTTTAGTCAAGGTCAAGCAGAGGATCATCGAATATCTGGCAGTTCGCAAGCTTAAGCCTGATGCAAGAGGCCCAGTGTTATGCTTTGTTGGCCCACCTGGTGTTGGGAAAACTTCTTTGGCATCATCCATTGCTGCTGCATTGGGTAGAAAATTCATACGCATATCCTTGGGAGGAGTGAAAGACGAGGCTGACATCAGGGGGCATAGAAGAACATATATTGGAAGTATGCCAGGGCGTCTTATTGATGGATTGAAGAGGGTATCTGTATACAATCCAGTTATGCTGCTAGATGAGATTGACAAGACAGGTTCTGATGTACGTGGTGATCCTGCTTCAGCTCTTCTGGAGGTCCTTGATCCTGAGCAGAACAAAAATTTTAATGACCAGTATCCTATTTTCCTTGGATTTTGTAGGCTCTCAGGATGCATCTATCTCCAATTTCCTCATAAAATAATGGATAAACCTTGTGTTGTATTTGTGGCAACTGCAAATAGAATGCAGCCTATTCCTCCACCTCTCCTTGATAGGATGGAAGTCATTGAGCTTCCTGGATACACACCGGAAGAAAAAATTAAGATTGCCATGCGACATTTAATTCCTAGAGTTCTGGATCAGCATGGATTGAATTCTGAGTTTCTTGAAATTCCGGAGGGGACTGTTTTCCAATATCTATTCCAATTTAGGAAGTCTGATTTGCATTTGGAAACACGCACCAGTAAAAAACTGGTCCAATTGTTTATGCCCAAAGTCGCTATGGTAAAACTTGTCATTCAGCGGTACACTAGAGAGGCTGGTGTTCGGAACCTTGAGAGAAATTTGGCTGCTTTGGCTCGTGCAGCAGCAGTTAGAGTTGTGGAGCAAGAAGGTACTTTTCCCATTAGTAGAGATGTGCACCATCTTTCGACACCACTGCTGGAAAGCAGACTGGCAGACGGAGCAGAAGTAGAAATGGAGGTCCTTCCCATTGGAGCAAACAATCACGAGATAGCAAGCACAATTTCTCCATTGATAGTGGATGAGGCCATGCTGGAAAAAATTCTTGGGCCTCCAAGGTTTGACGATAGAGAAGCAGCAGAGAGAGTTGCAACTCCAGGGGTGTCTGTTGGGCTTGTTTGGACTTCTTTTGGGGGAGAGGTTCAGTTTGTAGAGGCGACAGCAATGGTGGGAAAGGGTGACTTACATCTCACTGGCCAACTTGGTGATGTCATCAAAGAATCTGCCCAAATAGCTCTGACATGGGTAAGAGCAAGAGCAACTGATCTTAATTTGGTAGCTGCCGGAGTAACCAATATCTTGGAGGGCAGAGATATTCACATTCATTTTCCTGCTGGCGCAGTACCAAAGGATGGCCCTTCAGCTGGTGTGACTTTGGTGACTGCTCTAGTTTCTTTGCTCAGTCATAAAAGAGTGAGAGCAGACACTGCAATGACAGGAGAGATGACTCTGAGGGGCCTTGTGCTACCTGTTGGTGGTATAAAGGATAAGATATTGGCAGCACACCGCTACGGTATCAAGAGAGTTATTCTGCCCGAGAGAAACCTGAAAGACTTAGTTGAAGTTCCATCAGCTGTACTTGCCAATTTGGAGATACTACTCGCAAAACGAATGGAAGACGTGTTGGATCAGGCGTTTGAAGGTGGTTGTCCCTGGAGACAACAGTCAAAACTATGA 2727 44.7 MKIKLHFKHSVKLVEQELWQREEKGLIGILPVRDAAEATTIDPVLSQGVGSESGERSSRIQAGTADSERLDGKNQQEAIHWHTRGVAARALHLSRGVEKPSGRVTYTVVLEGLCRFSVQELSTRGTYYVARISPLEMTKAEMEQVEQDPDFTSLSRQFKATAMELISVLEQKKKTGGRTKVLLETVPVHKLADIFVASFEISFEEQLSMLDSIDLKVRLSKAMELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDDDDEDDLATLERKMQSAGMPSNIWKHAQRELRSLKKMQPQQPGYNSLRVYLELLADLPWIKATEEHELDLKAAKLRLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVSVYNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKNFNDQYPIFLGFCRLSGCIYLQFPHKIMDKPCVVFVATANRMQPIPPPLLDRMEVIELPGYTPEEKIKIAMRHLIPRVLDQHGLNSEFLEIPEGTVFQYLFQFRKSDLHLETRTSKKLVQLFMPKVAMVKLVIQRYTREAGVRNLERNLAALARAAAVRVVEQEGTFPISRDVHHLSTPLLESRLADGAEVEMEVLPIGANNHEIASTISPLIVDEAMLEKILGPPRFDDREAAERVATPGVSVGLVWTSFGGEVQFVEATAMVGKGDLHLTGQLGDVIKESAQIALTWVRARATDLNLVAAGVTNILEGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLLSHKRVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPERNLKDLVEVPSAVLANLEILLAKRMEDVLDQAFEGGCPWRQQSKL 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 39035920 39045475 - BLOR10735 Blo02g01005 57235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01005 908 Pfam Lon protease (S16) C-terminal proteolytic domain 690 896 IPR008269 GO:0004176|GO:0004252|GO:0006508
Blo02g01005 908 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 3 573 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Blo02g01005 908 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 599 908 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Blo02g01005 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 640 IPR027417 -
Blo02g01005 908 MobiDBLite consensus disorder prediction 44 64 - -
Blo02g01005 908 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 599 908 - -
Blo02g01005 908 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 3 573 - -
Blo02g01005 908 CDD AAA 359 537 - -
Blo02g01005 908 Pfam ATPase family associated with various cellular activities (AAA) 378 532 IPR003959 GO:0005524|GO:0016887
Blo02g01005 908 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 801 809 IPR008268 GO:0004176|GO:0004252|GO:0006508
Blo02g01005 908 Gene3D - 278 326 - -
Blo02g01005 908 Gene3D - 535 704 - -
Blo02g01005 908 ProSiteProfiles Lon proteolytic domain profile. 713 898 IPR008269 GO:0004176|GO:0004252|GO:0006508
Blo02g01005 908 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 828 847 - -
Blo02g01005 908 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 716 732 - -
Blo02g01005 908 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 851 869 - -
Blo02g01005 908 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 798 817 - -
Blo02g01005 908 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 382 401 - -
Blo02g01005 908 SUPERFAMILY Ribosomal protein S5 domain 2-like 716 895 IPR020568 -
Blo02g01005 908 SMART lon_5 1 228 IPR003111 -
Blo02g01005 908 Gene3D - 146 271 - -
Blo02g01005 908 MobiDBLite consensus disorder prediction 43 72 - -
Blo02g01005 908 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 1 908 IPR027501 GO:0004252|GO:0006515
Blo02g01005 908 Gene3D - 1 136 IPR046336 -
Blo02g01005 908 SUPERFAMILY PUA domain-like 80 227 IPR015947 -
Blo02g01005 908 ProSiteProfiles Lon N-terminal domain profile. 1 228 IPR003111 -
Blo02g01005 908 PIRSF Lon_proteas 55 582 IPR004815 GO:0004176|GO:0005524|GO:0006508
Blo02g01005 908 PIRSF Lon_proteas 599 659 IPR004815 GO:0004176|GO:0005524|GO:0006508
Blo02g01005 908 PIRSF Lon_proteas 675 899 IPR004815 GO:0004176|GO:0005524|GO:0006508
Blo02g01005 908 Gene3D - 715 900 IPR014721 -
Blo02g01005 908 Pfam ATP-dependent protease La (LON) substrate-binding domain 9 228 IPR003111 -
Blo02g01005 908 SMART AAA_5 374 536 IPR003593 -
Blo02g01005 908 Gene3D - 339 534 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01005 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] - csv:101213865 1392.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01005 Blo-Chr2:39035920 Blo10g00384 Blo-Chr10:6400223 1.99E-134 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g584 Blo02g01005 . . . Bpe05g00540 . . . Cmo06g00858 Cmo16g01139 . . . . . Cpe14g00900 . Bhi11g00104 . . . . Mch10g1616 . Cla10g00192 Cam10g0198 Cec10g0204 Cco10g0205 Clacu10g0202 Cmu10g1046 Cre10g0452 . . Cone6ag0622 Cone9ag0625 Lsi07g01235 . . Cme06g02505 . . . . . . Bma05g00397 . . . . Cma06g00835 Cma16g01089 . Car16g01031 . . . . . . . . . . . . . . . . . Csa03g00209 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008731 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g01005 Blo_Chr02 FPKM 9.245919 8.85611 10.851265 8.51827 3.933403 3.927677 3.561678 14.257429 12.369146 15.922394