Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01043 ATGAATAAGTCAAAAGAAAATTTCAAGGATATAGTTATATACGGAGGCAGTGAAAAAGATGAAGAGAAATCAAGCTCAAGAAAATCTGAAGTTACCGCTGGAAGAACTAAATCTATTCTTCCTCCTATTGAAACCTATTGGTATCTCCCACATAAAGAACAGAAGCCATCAACTAATTTAGGATTGGTGATGCTATCTTATCCGATTAAGTTTCGAGAATCATTCAAGAAATTTCGCAGGAGCAAAAGCTTAAAGGTAATACTTGAAGGAGCTCATGATCCAAATGATAAAAATATTGTTCAGGATTTCCATAATTTGCTGCGTAGCACAGGTCAGTTGCCTGAAAAGCATGATAATTATCATACTCTTCTAAGATTTCTGAGGATGAGGGATTTTGATCTTGCTAAAGCAAAAGACATGTTCTTGAATTTTCTTAAATGGCGTGAAGATTTTAGAACCGACACAATTTCAAAGGAATTTAAGTTTGAGGAATATGCCAATGTGAAAAAATGTTATCCCCATGGATATCATGGGGTTGATAAATATGGCCGACCATTATACATTGAGCGGATTGGGATGGTTGACCTCAATGCATTACTGCAAATAACTACAATTGATAGGTTTGTTAAACACCACGTGCTGGAACAAGAGAAGACCTTAAATTTAAGGTATCCTTCATGTTCAATTGCAGCTAAGAAGCATATAGCTTCCACAACCAGTATTTTAGATGTCCTTGGAGTGGGAATGGCTAACTTCTCCAAGCCTGCAAGACATTTATTCACAGAAATTCAGAAGATTAACAGTAATTACTACCCAGAGACTTTAAATCGACTCTTTATCATCAATGCTGGGTCGAGGTTTAAAGTTTTGTGGAAAGTTTTAAGGGCATTTCTGGATGCTCGTACATTAGCGAAAATTCATGTATTGGGACATGACTATATCAAAGATCTTCTTGAATTCGTTGATCCAAGGTATCGCAATTGCTGGAAGAACCTTGTTAATTTTCTGATCAGTGCCATTAAATCTAATGATATATAA 1038 35.74 MNKSKENFKDIVIYGGSEKDEEKSSSRKSEVTAGRTKSILPPIETYWYLPHKEQKPSTNLGLVMLSYPIKFRESFKKFRRSKSLKVILEGAHDPNDKNIVQDFHNLLRSTGQLPEKHDNYHTLLRFLRMRDFDLAKAKDMFLNFLKWREDFRTDTISKEFKFEEYANVKKCYPHGYHGVDKYGRPLYIERIGMVDLNALLQITTIDRFVKHHVLEQEKTLNLRYPSCSIAAKKHIASTTSILDVLGVGMANFSKPARHLFTEIQKINSNYYPETLNRLFIINAGSRFKVLWKVLRAFLDARTLAKIHVLGHDYIKDLLEFVDPRYRNCWKNLVNFLISAIKSNDI 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40323977 40326737 + BLOR10773 Blo02g01043 57273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01043 345 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 32 323 - -
Blo02g01043 345 Gene3D - 153 326 IPR036865 -
Blo02g01043 345 SMART sec14_4 164 333 IPR001251 -
Blo02g01043 345 MobiDBLite consensus disorder prediction 1 30 - -
Blo02g01043 345 Gene3D - 70 151 - -
Blo02g01043 345 Pfam CRAL/TRIO domain 172 325 IPR001251 -
Blo02g01043 345 SMART CRAL_TRIO_N_2 119 144 IPR011074 -
Blo02g01043 345 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH11 32 323 - -
Blo02g01043 345 CDD SEC14 162 323 IPR001251 -
Blo02g01043 345 SUPERFAMILY CRAL/TRIO domain 163 325 IPR036865 -
Blo02g01043 345 SUPERFAMILY CRAL/TRIO N-terminal domain 92 159 IPR036273 -
Blo02g01043 345 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 164 344 IPR001251 -
Blo02g01043 345 PRINTS Cellular retinaldehyde-binding protein signature 122 144 - -
Blo02g01043 345 PRINTS Cellular retinaldehyde-binding protein signature 291 310 - -
Blo02g01043 345 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01043 - - - jre:108985339 445.662
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g01043 Blo03g00160 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01043 Blo-Chr2:40323977 Blo13g00547 Blo-Chr13:27372990 4.67E-86 dispersed
Blo02g01043 Blo-Chr2:40323977 Blo03g00161 Blo-Chr3:4170932 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g535 Blo02g01043 Blo03g00160 Bda06g00028 Bda08g00578 Bpe05g00581 Bpe07g00178 . . . Cmo16g01192 . . . . Sed04g1715 Cpe14g00944 . Bhi11g00193 Tan01g2028 Cmetu06g1269 . . Mch10g1562 . Cla10g00257 Cam10g0263 Cec10g0271 Cco10g0269 Clacu10g0265 Cmu10g1108 Cre10g0516 Cone8ag0396 . Cone6ag0672 Cone9ag0679 Lsi07g01302 . . Cme06g02571 . . . . . . . Bma12g00644 . . . . Cma16g01140 . Car16g01075 . . . . . . . . . . . . . . . . . Csa03g00275 Chy06g02047 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009123 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g01043 Blo_Chr02 FPKM 14.573456 14.384017 5.222493 5.938344 5.168088 4.69294 4.717416 9.753236 10.662689 10.708594