Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01045 ATGGCTTCCCAATTCGCCCTTAGAAGGATTGCCTCGTCATGCCCACGCCCTAAGGTTTTGGGTCCTATTCGCTCGGCCTCTGTTTCCCGATCCTTCAATACCAACGCTGCCCAAGTCACCGATTACGATGAAAGCGACCGATCTATTGATGTCGATCGCCGGAGCGACCACGCCGTCTCCCGTCGCCTCGACAGGTTCCCTGGCTTCGCAGATGTCTTCGATCCTTTTTCTCCGCCGAGGAGTTTGAGCCAAGTGCTGAATCTGATGGACCAATTCATGGAGGATCCATTTCTAGCGGCGTCGAGAGGCGTGGGAGCAGGATCGAGAAGAGGGTGGAACGTGAAGGAAGACGACGAGGCATTGTATCTGCGGATGGACATGCCTGGTCTCGGAAAAGAGAACGTCAAGGTTTCGGTTGAACATAACACTCTCATAATCAAAGGAGAAGGAGAGGAGAAATCGGAGGAGGGGGAGAGTGGAAGGAGGTACTCGAGCCGGCTGGATTTGCCACCGGACGTGTACAAGCTGGACTCCATAAAAGCAGAGATGAAGAATGGAGTGCTGAAAGTTGCAGTGGCCAAAGTGAAGGAGGAAGAGAGGAAGAATGTCAGGGAAGTGAAAGTGGACTAA 630 53.02 MASQFALRRIASSCPRPKVLGPIRSASVSRSFNTNAAQVTDYDESDRSIDVDRRSDHAVSRRLDRFPGFADVFDPFSPPRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWNVKEDDEALYLRMDMPGLGKENVKVSVEHNTLIIKGEGEEKSEEGESGRRYSSRLDLPPDVYKLDSIKAEMKNGVLKVAVAKVKEEERKNVREVKVD 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40356938 40357658 + BLOR10775 Blo02g01045 57275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01045 209 Gene3D - 69 208 IPR008978 -
Blo02g01045 209 PANTHER HSP20-LIKE CHAPERONE-RELATED 16 209 - -
Blo02g01045 209 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 16 209 IPR044656 -
Blo02g01045 209 Pfam Hsp20/alpha crystallin family 114 208 IPR002068 -
Blo02g01045 209 MobiDBLite consensus disorder prediction 147 165 - -
Blo02g01045 209 CDD ACD_sHsps-like 113 194 - -
Blo02g01045 209 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 103 209 IPR002068 -
Blo02g01045 209 MobiDBLite consensus disorder prediction 147 168 - -
Blo02g01045 209 SUPERFAMILY HSP20-like chaperones 81 202 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01045 K13993 HSP20; HSP20 family protein - csv:101219106 229.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g01045 Blo03g00162 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01045 Blo-Chr2:40356938 Blo06g00817 Blo-Chr6:31411546 1.89E-20 dispersed
Blo02g01045 Blo-Chr2:40356938 Blo03g00162 Blo-Chr3:4180091 5.65E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g532 Blo02g01045 Blo03g00162 . . Bpe05g00583 . . . . . . . . . . Cpe14g00946 . Bhi11g00197 . . . . . . Cla10g00259 Cam10g0265 Cec10g0273 Cco10g0271 Clacu10g0267 Cmu10g1110 Cre10g0518 Cone8ag0395 Cone12ag0380 . . . . . Cme06g02575 . . . . . . . Bma12g00642 . . . . Cma16g01142 . Car16g01081 . . . . . . . . . . . . . . . . . Csa03g00278 Chy06g02044 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002899 1 4 2 2 1 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 1 1 1 1 2 1 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g01045 Blo_Chr02 FPKM 55.35593 59.867664 101.465172 103.197693 32.969044 32.053741 34.075493 27.43416 33.765339 26.772467