Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01051 ATGTCGGCTTTCAAAGACGGAGATCCTCGTGTCAACGGCATCAAAAGTAGTATTCGCGTTGTACCCAATTTCCCCAAACCAGGAATCATGTTTCAAGACATAACCACTCTGCTACTTGAACCGAAAGCATTCAAAGATACGATCGATATGTTTGTTGAGCGATACAAAGACAAAGACATTTCAGTCGTTGCAGGGACGTTGAAGGCAGACGTAGCTTCAATCTTAAAGAAGCTTGCGACTCTGTCGTACCGAATCGATGAGGGCAATTTGAAGGATACAGGAAAGGGAAAAACAGAAGCTGGAGGAGGAGGATCTGGAAGGAGTTCTAGAACCCATTCTTGTTCGGCCGTCATCATTGTCAGTGACAATACAAAAGGGTGTGACTCCTCTGTTGAAGGAATAGAAGCTCGAGGTTTTATATTTGGTCCTCCAATTGCACTGGCTATAGGTGCAAAGTTTGTTCCTTTGAGGAAACCCAAGAAGTTACCTGGGGAAGTTATTTTCGAGGAGTACGTGCTCGAATATGGAAGAGATTGTCTCGAGATGCATGTCGGGGCTGTCGAGGCCGGTGATCGGGCTCTGCTGGTGGATGATTTAATCGCAACGGGTGGAACTCTATGTGCTGCCATGAATTTAGTCGAACGGGCGGGAGCAGAAGTCGTTGAATGCGCCTGCATCATCGAATTGGTGGAATTAAAGGGTCGAGAAAAGCTGGAGGGAAAGCCGCTGTACGTGCTGGTGGAGAAGCAATAA 753 46.88 MSAFKDGDPRVNGIKSSIRVVPNFPKPGIMFQDITTLLLEPKAFKDTIDMFVERYKDKDISVVAGTLKADVASILKKLATLSYRIDEGNLKDTGKGKTEAGGGGSGRSSRTHSCSAVIIVSDNTKGCDSSVEGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGEVIFEEYVLEYGRDCLEMHVGAVEAGDRALLVDDLIATGGTLCAAMNLVERAGAEVVECACIIELVELKGREKLEGKPLYVLVEKQ 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40500707 40508293 - BLOR10781 Blo02g01051 57281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01051 250 Hamap Adenine phosphoribosyltransferase [apt]. 14 249 IPR005764 GO:0003999|GO:0005737|GO:0006168
Blo02g01051 250 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 3-RELATED 129 249 - -
Blo02g01051 250 SUPERFAMILY PRTase-like 13 65 IPR029057 -
Blo02g01051 250 SUPERFAMILY PRTase-like 131 243 IPR029057 -
Blo02g01051 250 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 6 65 - -
Blo02g01051 250 Gene3D - 2 71 IPR029057 -
Blo02g01051 250 CDD PRTases_typeI 133 248 IPR000836 -
Blo02g01051 250 Pfam Phosphoribosyl transferase domain 132 228 IPR000836 -
Blo02g01051 250 Gene3D - 121 250 IPR029057 -
Blo02g01051 250 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 129 249 - -
Blo02g01051 250 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 3-RELATED 6 65 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01051 K00759 APRT, apt; adenine phosphoribosyltransferase [EC:2.4.2.7] - dct:110111278 274.633
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01051 Blo-Chr2:40500707 Blo17g00017 Blo-Chr17:98338 2.63E-21 dispersed
Blo17g00861 Blo-Chr17:28084072 Blo02g01051 Blo-Chr2:40500707 2.02E-85 transposed
Blo02g01051 Blo-Chr2:40500707 Blo03g00170 Blo-Chr3:4285098 7.20E-16 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo17g00017 . 402 557 PRT Gene Family AT1G80050 73.7 1.1e-64 243.0
Blo03g00170 . 1 136 PRT Gene Family AT1G80050 77.2 8.2e-57 216.9
Blo02g01051 . 30 248 PRT Gene Family AT1G80050 51.6 2.1e-52 202.2
Blo18g00019 . 80 220 PRT Gene Family AT1G80050 70.2 2.7e-52 201.8
Blo17g00861 . 27 200 PRT Gene Family AT1G80050 60.9 2.7e-52 201.8
Blo17g00017 . 370 517 PRT Gene Family AT5G11160 83.8 5.3e-67 250.8
Blo17g00861 . 5 166 PRT Gene Family AT5G11160 58.6 2.1e-47 185.7
Blo03g00170 . 1 117 PRT Gene Family AT5G11160 76.1 5.2e-46 181.0
Blo18g00019 . 80 193 PRT Gene Family AT5G11160 75.4 4.1e-43 171.4
Blo17g00861 . 4 203 PRT Gene Family AT1G27450 70.5 4.2e-73 271.2
Blo17g00017 . 380 552 PRT Gene Family AT1G27450 69.9 4.0e-68 254.6
Blo02g01051 . 8 248 PRT Gene Family AT1G27450 53.9 2.5e-62 235.3
Blo03g00170 . 1 136 PRT Gene Family AT1G27450 77.9 2.5e-57 218.8
Blo18g00019 . 80 213 PRT Gene Family AT1G27450 69.4 6.1e-48 187.6
Blo02g00658 . 70 526 PRT Gene Family AT2G16570 81.7 1.9e-217 752.3
Blo02g00660 . 1 395 PRT Gene Family AT2G16570 84.8 2.7e-195 678.7
Blo02g00658 . 71 522 PRT Gene Family AT4G34740 83.4 1.0e-218 756.5
Blo02g00660 . 1 395 PRT Gene Family AT4G34740 85.3 1.4e-196 682.9
Blo02g00658 . 70 520 PRT Gene Family AT4G38880 72.4 2.1e-186 649.0
Blo02g00660 . 1 368 PRT Gene Family AT4G38880 74.3 8.7e-156 547.4
Blo17g00861 . 4 203 PRT Gene Family AT1G27450 70.5 4.2e-73 271.2
Blo17g00017 . 380 552 PRT Gene Family AT1G27450 69.9 4.0e-68 254.6
Blo02g01051 . 8 248 PRT Gene Family AT1G27450 53.9 2.5e-62 235.3
Blo03g00170 . 1 136 PRT Gene Family AT1G27450 77.9 2.5e-57 218.8
Blo18g00019 . 80 213 PRT Gene Family AT1G27450 69.4 6.1e-48 187.6
Blo17g00017 . 402 557 PRT Gene Family AT1G80050 73.7 1.1e-64 243.0
Blo03g00170 . 1 136 PRT Gene Family AT1G80050 77.2 8.2e-57 216.9
Blo02g01051 . 30 248 PRT Gene Family AT1G80050 51.6 2.1e-52 202.2
Blo18g00019 . 80 220 PRT Gene Family AT1G80050 70.2 2.7e-52 201.8
Blo17g00861 . 27 200 PRT Gene Family AT1G80050 60.9 2.7e-52 201.8
Blo17g00017 . 370 517 PRT Gene Family AT5G11160 83.8 5.3e-67 250.8
Blo17g00861 . 5 166 PRT Gene Family AT5G11160 58.6 2.1e-47 185.7
Blo03g00170 . 1 117 PRT Gene Family AT5G11160 76.1 5.2e-46 181.0
Blo18g00019 . 80 193 PRT Gene Family AT5G11160 75.4 4.1e-43 171.4
Blo18g00155 . 3 188 PRT Gene Family AT1G71750 61.9 6.5e-64 240.7
Blo03g01488 . 15 469 PRT Gene Family AT1G55810 82.9 3.9e-221 764.2
Blo03g00493 . 170 624 PRT Gene Family AT1G55810 83.6 8.6e-221 763.1
Blo17g00327 . 19 218 PRT Gene Family AT1G55810 59.2 2.2e-59 226.9
Blo17g00329 . 39 153 PRT Gene Family AT1G55810 84.3 1.8e-53 207.2
Blo03g00493 . 221 628 PRT Gene Family AT3G27440 76.0 2.5e-182 635.2
Blo03g01488 . 66 473 PRT Gene Family AT3G27440 73.8 2.0e-179 625.5
Blo17g00329 . 39 153 PRT Gene Family AT3G27440 77.4 3.3e-49 193.0
Blo17g00327 . 81 218 PRT Gene Family AT3G27440 70.3 2.8e-48 189.9
Blo03g01488 . 3 468 PRT Gene Family AT3G27190 74.9 1.3e-206 716.1
Blo03g00493 . 157 623 PRT Gene Family AT3G27190 73.7 1.6e-204 709.1
Blo17g00327 . 1 218 PRT Gene Family AT3G27190 77.2 1.4e-88 323.9
Blo17g00329 . 34 153 PRT Gene Family AT3G27190 84.2 9.3e-56 214.9
Blo07g01168 . 48 286 PRT Gene Family AT3G53900 75.0 1.6e-103 372.9
Blo03g00493 . 155 624 PRT Gene Family AT4G26510 83.9 1.9e-231 798.5
Blo03g01488 . 1 469 PRT Gene Family AT4G26510 83.1 3.1e-229 791.2
Blo17g00327 . 12 218 PRT Gene Family AT4G26510 63.3 1.6e-65 247.3
Blo17g00329 . 39 153 PRT Gene Family AT4G26510 86.1 6.5e-54 208.8
Blo03g01488 . 11 471 PRT Gene Family AT5G40870 74.8 1.9e-205 712.2
Blo03g00493 . 157 626 PRT Gene Family AT5G40870 73.0 2.7e-204 708.4
Blo17g00327 . 1 218 PRT Gene Family AT5G40870 78.4 6.2e-92 335.1
Blo17g00329 . 39 153 PRT Gene Family AT5G40870 87.0 1.6e-55 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g01051 Blo_Chr02 FPKM 12.057228 12.668156 13.428721 13.013317 18.294399 17.104492 17.730999 13.152843 13.07838 13.040833