Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01068 ATGTTCGGATCTAAGAAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGACGAAGGAGAGGGCAGGAAGATGGGTGAGTTCTTAGCATGGCTCATTTCCTTCTTCTTCCTCATTTCGCTTCTTGTCATCATCATTTACCAGCTAATGTGCTTGGCCGATTTGGAGTTCGACCATATCAACCCTTACGACTCTTCCTCTCGGATTAACAAAATGATTTTGCCCGAGTATATTAGTCAAGGCATCTTGTGCATCTTCTATCTTTTGACAGGCCATTGGGTTATGTCTTTGTTTTGTGCCCCCTACCTCTATTATAACTTCAGACTGGCTGTTCGAGTTCCAGTGTTCGTCACGTCTCACTTCGTCTTCGTCTTCGTCGTTTCTTCTTCGGTCGGCGCCCACTCCACTCTCCAGCAGAAGAGAAGACAACTCGCTAGAAGAAGACGCTCGCTAGTCGCTCGCTGCTGTCGCTTGCTGCTCTGCCTCGGAAACACACTTCGCCACTCTCCACTCGCAACATCGCCACGTCGCCGTCTCGGTCGCCAGTCGGAGAGTCGCCTCTGCCCTCTCGGCCGCCATTCGCCAATCGCCAGTCGCCAGTCTCCCTCAGCTCCGGCTCGGCTCCGGTGCCGATTTTCTCGTGACATACCAATGGCTCAGTTCATCATCAATTTGAATTCTACACTTCCGGCATCTCAGAAATTTATAATACACGTATTGGATAACACTCACCTCTTTGTGCAACCATATGCTGCTGAAATGATTCGAAGTGCTGTTTCTGAATTTAGGGACCAGAATTCCTACGAGAAGCCTGCTTGA 813 49.94 MFGSKKERRGEERRGDEGEGRKMGEFLAWLISFFFLISLLVIIIYQLMCLADLEFDHINPYDSSSRINKMILPEYISQGILCIFYLLTGHWVMSLFCAPYLYYNFRLAVRVPVFVTSHFVFVFVVSSSVGAHSTLQQKRRQLARRRRSLVARCCRLLLCLGNTLRHSPLATSPRRRLGRQSESRLCPLGRHSPIASRQSPSAPARLRCRFSRDIPMAQFIINLNSTLPASQKFIIHVLDNTHLFVQPYAAEMIRSAVSEFRDQNSYEKPA 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40971121 40978425 + BLOR10798 Blo02g01068 57298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01068 270 Pfam Transcription factor TFIIH complex subunit Tfb5 213 268 IPR009400 GO:0000439|GO:0006289|GO:0006367
Blo02g01068 270 SMART Tbf5_2 210 268 IPR009400 GO:0000439|GO:0006289|GO:0006367
Blo02g01068 270 Gene3D - 207 268 IPR035935 -
Blo02g01068 270 SMART Cornichon_2 26 128 IPR003377 GO:0016192
Blo02g01068 270 PANTHER CORNICHON-RELATED 23 114 - -
Blo02g01068 270 Pfam Cornichon protein 27 120 IPR003377 GO:0016192
Blo02g01068 270 PANTHER CORNICHON FAMILY PROTEIN 23 114 - -
Blo02g01068 270 SUPERFAMILY TFB5-like 212 268 IPR035935 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01068 K20368 CNIH, ERV14; protein cornichon - jre:109011014 149.828
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01068 Blo-Chr2:40971121 Blo18g00471 Blo-Chr18:5445356 8.36E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g470 Blo02g01068 . . Bda08g00553 Bpe05g00606 . . . Cmo06g00771 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00785 . . . . . . Car06g00669 . Cpe08g00772 . . . . . . . . . . . . . . . . Csa03g00327 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000365 6 3 2 4 3 4 6 4 3 2 4 4 6 3 4 6 4 3 7 4 3 2 3 5 5 2 4 9 10 3 128
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g01068 Blo_Chr02 FPKM 0.0 0.434338 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0