Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01097 ATGGAAGAAACTCAGACAAAGAGAGTAATTCAAGTCAATCCAAAATTGGCAATCTCACCTTTGTTTCTTGGTTGCAATCAGGCATATAGTGGTGATCTCAATGCTGCAGTGAATTCATATTTTAGTGAAGGAGATAGCCGTACACCTTTAATCATGCATGAGACATCTGTTGCTGGTCGAGGTGATTTCATGGATATTGATGATCCAGTTCATGTTGATTCATGGCGACCAACCCCATCACTTCTTTCTGAAGCTAGAGAGATTATGAATCCATTTTCCATTCTAGATCCAATTTTCCGTGGTAGATTATTTGGTAGAAGTTCTGGTTTTACAAGTCGCTCACAGATTGCCCCCCCAAGAGAGGTGAGGGAGATCCCCATTGAGTTCAAAGATGACAAACTACCATCTGGTCAATCTGGCCTGGCTCCTAGAATAGAAGAAGTCACTGGAACTTCAGATGCATATATTTCAGATGTAAAAGGGGTGGTTGAATTGGTAGATGATGACGATAATTCAGATGATCCCTTCCTACAGCCAAAAAGTCGTGGGGAGGGATCAGGTGGCAGTTATCGCAAAGGGCTTGGTATATCTAGTGCTTCTGAATTTGATCATTACCAAGGCTATGGCAATGATATTGAAGAAGAAATGATCCGAGCTGCAATTGAGGCTTCAAGAAGAGATGCTGAAGAAGGCCTTACAACTAAGCAATTTAGTATACAAAATGTATTAAACGGTGATGAGTGCCAGACTGCAGAGCAAGAAAAAGAATTTCACGAGAAGGGTGGTAGTGTCAAAGAATCAAAAGAAGGATCTTCTTTGGCAAATGAGGTGGGGATGAGGAAAATAGGAGCGACAAATGAAAGCACATTGAGTCAATTTAGGTCCGAAGCTGGACACACATCTATTTGGAATGAGGCTGAAGATTTGGAGGAGAAATCCTTACTCAGAGATGAGGGTGCGTCCTCTGGTATCAATGGGCCTGCCAACGAAGTGGGTAATAGTGACTTAAGCCCATCAGCAAGTCCAAGGGAGCAAGATACAGGAAACTCTTCCCAGCACTGTGGCAAAGCCTTTCCGTCTGATGAGTGGGGAGGCATATCATCGGAGGAACATGATGAAGCTGTTATGCTTGAAGCTGCTATGTTTGGTGGAATTCCTCAAGGGAAAGGATATCATTTTGCTCGTGCGCCTCATCAGTTCATGAGAAACGGTGATTCTTACCTCCAACCATTTCCCCGTGCCCCTTCTCCATCTCTTTTGGCTCAGCGCATAATACGTGAGCAGCAGGATGATGAATATCTTGCAGCATTGCAAGCTGATAGAGAAAAGGAATTAAAAGCGATGGAGGAAGCTGAAGCTCATCGTAAAGAAGAGAGACAGAAAGAGGAAGAATCTCGTATTAAACTGGAGGAGCAGCAGGAATTGGAAAGGCAGTTAGCAGCAAAACATGCTTCTCTACCTGATGAACCATCCTTCGATGATGAAAATGCGGTTACCCTTCTGGTGCGCATGCCAGATGGCAGCCGACGTGGACGCCGATTTCTCAAACATGACAAGCTACAGTTTCTCTTTGATTTTATTGATATCAGTAGATTTGTCAAACCTGGCTCATATAGATTGGTAAGGCCTTACCCTAGGCGAGCTTTCTGTGATGACGAGAGTGCTTTGACACTGACTGAGCTTGGCCTCACTAGCAAACAAGAAGCTTTGTTTCTTGAGTTGATATAG 1728 43.69 MEETQTKRVIQVNPKLAISPLFLGCNQAYSGDLNAAVNSYFSEGDSRTPLIMHETSVAGRGDFMDIDDPVHVDSWRPTPSLLSEAREIMNPFSILDPIFRGRLFGRSSGFTSRSQIAPPREVREIPIEFKDDKLPSGQSGLAPRIEEVTGTSDAYISDVKGVVELVDDDDNSDDPFLQPKSRGEGSGGSYRKGLGISSASEFDHYQGYGNDIEEEMIRAAIEASRRDAEEGLTTKQFSIQNVLNGDECQTAEQEKEFHEKGGSVKESKEGSSLANEVGMRKIGATNESTLSQFRSEAGHTSIWNEAEDLEEKSLLRDEGASSGINGPANEVGNSDLSPSASPREQDTGNSSQHCGKAFPSDEWGGISSEEHDEAVMLEAAMFGGIPQGKGYHFARAPHQFMRNGDSYLQPFPRAPSPSLLAQRIIREQQDDEYLAALQADREKELKAMEEAEAHRKEERQKEEESRIKLEEQQELERQLAAKHASLPDEPSFDDENAVTLLVRMPDGSRRGRRFLKHDKLQFLFDFIDISRFVKPGSYRLVRPYPRRAFCDDESALTLTELGLTSKQEALFLELI 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 41912902 41915777 + BLOR10827 Blo02g01097 57327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01097 575 Coils Coil 434 478 - -
Blo02g01097 575 MobiDBLite consensus disorder prediction 249 371 - -
Blo02g01097 575 CDD UBX 499 573 - -
Blo02g01097 575 SUPERFAMILY Ubiquitin-like 456 571 IPR029071 -
Blo02g01097 575 MobiDBLite consensus disorder prediction 301 317 - -
Blo02g01097 575 Gene3D - 494 574 - -
Blo02g01097 575 Pfam UBX domain 494 573 IPR001012 GO:0005515
Blo02g01097 575 PANTHER FAS-ASSOCIATED PROTEIN 29 575 - -
Blo02g01097 575 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 213 231 IPR003903 -
Blo02g01097 575 MobiDBLite consensus disorder prediction 326 356 - -
Blo02g01097 575 MobiDBLite consensus disorder prediction 249 266 - -
Blo02g01097 575 MobiDBLite consensus disorder prediction 166 192 - -
Blo02g01097 575 SMART ubx_3 490 574 IPR001012 GO:0005515
Blo02g01097 575 MobiDBLite consensus disorder prediction 282 299 - -
Blo02g01097 575 ProSiteProfiles UBX domain profile. 493 571 IPR001012 GO:0005515
Blo02g01097 575 PANTHER OS09G0525600 PROTEIN 29 575 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01097 - - - mdm:114824350 517.309
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g01097 Blo03g00196 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00295 Blo-Chr1:3676097 Blo02g01097 Blo-Chr2:41912902 3.44E-07 dispersed
Blo02g01097 Blo-Chr2:41912902 Blo04g00728 Blo-Chr4:6750357 4.78E-12 dispersed
Blo02g01097 Blo-Chr2:41912902 Blo03g00196 Blo-Chr3:4640054 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g368 Blo02g01097 Blo03g00196 . . . . . . . . . . . . . . . Bhi11g00393 . . . Hepe06g1233 . . Cla10g00354 Cam10g0366 Cec10g0384 Cco10g0379 Clacu10g0370 Cmu10g1207 Cre10g0622 . . . . . . . . . . . . . . . . . . . Cma06g00707 . . Car16g00956 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004108 2 1 2 2 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 2 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g01097 Blo_Chr02 FPKM 24.396826 25.221203 30.777792 35.148716 16.776579 12.820208 15.993328 26.005234 25.237535 28.843992