Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01098 ATGGCGTCTTCTTCTTCAGGCACCGGAAGCAGCTACGACACGCCGTGGGTGGAGAAGTATAGGCCAAACAAGGTCGCAGACATTGTGGGAAATGAAGAGGCTGTTTCAAGGCTCCAAGTCATTGCTCGCGATGGGAACATGCCAAACCTCATCTTAGCCGGCCCTCCTGGAACCGGTAAAACAACTAGCATACTTGCTCTTGCGCACGAGCTTTTAGGACCAAACTACAAGGAGGCTGTGTTGGAGCTAAATGCATCTGATGACAGGGGAATAGATGTTGTGAGGAACAAAATTAAAATGTTTGCCCAGAAAAAAGTAACTCTGGCACCGGGCAAGCATAAAATAGTAATCTTGGATGAAGCTGATAGCATGACATCTGGAGCACAACAAGCTTTGAGGAGGACTATGGAAATATATTCAAACACTACCCGCTTTGCTCTTGCATGCAATACATCTGCAAAAATAATTGAGCCTATTCAGAGTAGATGTGCGATTGTCAGATATTCAAGATTATCTGATCAAGAGATACTTGGTCGTCTGATGGTGGTTATTCAAGCTGAAAAGAAAATGATTAATGATACATGCTTGATGGTTTGTTTGGCTTGTATAGTAGTGAAGAATGTTAGTCATATATCTGTTCCTTATGTGCCAGAGGGCCTTGAGGCAATCATCTTTACAGCTGATGGAGATATGAGACAGGCATTGAACAACTTACAAGCTACATACAGTGGATTTCGATTTGTAAACCAAGACAATGTGTTCAAGGTTTGTGATCAGCCTCATCCGTTGCATGTGAAGAACATGGTACGTAACGTGATTGAAGGAAAATTTGACGAAGCTTGTTCAGGTCTGAAGCAACTATACGACTTGGGCTATTCTCCCACTGACATTATCACGACCCTTTTCCGCATCATTAAAAACTACGACATGGCTGAGTTTCTGAAATTGGAATTTATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCATATCTTCAGTTATGTGGACTTTTGGCTAAACTTTCTATTGCACGTGTAACAGCCAAAGCTGAATGA 1071 42.3 MASSSSGTGSSYDTPWVEKYRPNKVADIVGNEEAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLAPGKHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSAKIIEPIQSRCAIVRYSRLSDQEILGRLMVVIQAEKKMINDTCLMVCLACIVVKNVSHISVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVKNMVRNVIEGKFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEFLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIARVTAKAE 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 41917201 41919046 - BLOR10828 Blo02g01098 57328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01098 356 Pfam ATPase family associated with various cellular activities (AAA) 50 168 IPR003959 GO:0005524|GO:0016887
Blo02g01098 356 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 208 353 - -
Blo02g01098 356 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 8 196 - -
Blo02g01098 356 Gene3D - 172 259 - -
Blo02g01098 356 CDD HLD_clamp_RFC 171 257 - -
Blo02g01098 356 SUPERFAMILY post-AAA+ oligomerization domain-like 259 349 IPR008921 GO:0003677|GO:0006260
Blo02g01098 356 SMART AAA_5 46 172 IPR003593 -
Blo02g01098 356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 258 IPR027417 -
Blo02g01098 356 Pfam Replication factor C C-terminal domain 260 345 IPR013748 -
Blo02g01098 356 PANTHER REPLICATION FACTOR C SUBUNIT 2 208 353 - -
Blo02g01098 356 Gene3D - 8 171 IPR027417 -
Blo02g01098 356 PANTHER REPLICATION FACTOR C SUBUNIT 2 8 196 - -
Blo02g01098 356 CDD AAA 29 166 - -
Blo02g01098 356 Gene3D - 260 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01098 Blo-Chr2:41917201 Blo12g01123 Blo-Chr12:28861147 2.45E-53 dispersed
Blo02g01098 Blo-Chr2:41917201 Blo18g00180 Blo-Chr18:1717491 2.39E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01098 K10755 - csv:101208984 598.971