Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01100 ATGTACAGTTTTCGATCTCTGAGTTTTGTGATGGCGCCGTTCCCGACGGAGATTTCCACCGAATCTGGACTTGGCGATTCACAGAGATCTCTACCCACGCCTTTTCTAACGAAAACGTATCAACTCGTGGAGGATCCGGAGGTAGACGATCTGATTTCGTGGAATGAAGACGGATCGACCTTCGTTGTTTGGAGACCTGCTGAATTCGCCAGAGATCTGCTTCCCAAATACTTCAAGCACAACAATTTCTCTAGCTTTGTTCGTCAGCTTAACACATACGGATTTAGGAAAGTTGTTCCGGATCGATGGGAATTCGCAAACGACTGTTTCAGAAGAGGTGAAAAAGGGCTCCTACGAGATATTCAACGGCGAAAAATCTTGACGACGGTGACACCCACGGTCGCTTCTCCGGGAACTGTCGCTGCTCTACCTCCAGTGGTGTGTTCTGTGTCTCCATCTAATTCCGGCGACGAAATTGTCGTCTCCTCGACCCCTTCGCCGGTAGCTGTACCGGCCACGTTGCGTCGCACCTCCAGCTGCACAACGCCGGAGCTTCTCGAAGAGAACGAGCGGCTGCGAAAGGAAAACATGCACCTTAGTCACGAGCTAACGCAGCTGAAAGGCCTCTGCAACAATATTTTCACTCTGATGGCAAATTACGCATCTGGGCAGTTGGATTCCGCCGTCGCCTCTGAAGGTAAGCCTCTGGAGTTATTACCGGCGAGGGAAGCCCGAGCTGAGGAATACAACGGCGTTTGCAGCGTTGATGTCGGGGCCTTGACGGGAGAAGGAATCACTCCAAGGTTGTTTGGCGTTTCAATCGCAGCGAAACGAGCAAGGAGGGACGAGGAGAAGGAAGAAGAGCAGCCAGGAAAAAATCAACTACATCAAGAACGAAAGAACCAATCGGACGTCAAATCAGAGCCGTTGGACGGAAAATCAGAAGAGCAGGATGACCCGCAGTGGCTAGAGCTAGGAAACGACGGTCGATGA 993 51.36 MYSFRSLSFVMAPFPTEISTESGLGDSQRSLPTPFLTKTYQLVEDPEVDDLISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGEKGLLRDIQRRKILTTVTPTVASPGTVAALPPVVCSVSPSNSGDEIVVSSTPSPVAVPATLRRTSSCTTPELLEENERLRKENMHLSHELTQLKGLCNNIFTLMANYASGQLDSAVASEGKPLELLPAREARAEEYNGVCSVDVGALTGEGITPRLFGVSIAAKRARRDEEKEEEQPGKNQLHQERKNQSDVKSEPLDGKSEEQDDPQWLELGNDGR 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 41938089 41939219 - BLOR10830 Blo02g01100 57330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01100 330 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2B 20 319 - -
Blo02g01100 330 MobiDBLite consensus disorder prediction 278 330 - -
Blo02g01100 330 SMART hsfneu3 31 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo02g01100 330 Gene3D - 27 125 IPR036388 -
Blo02g01100 330 Pfam HSF-type DNA-binding 35 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo02g01100 330 Coils Coil 189 209 - -
Blo02g01100 330 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo02g01100 330 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo02g01100 330 PRINTS Heat shock factor (HSF) domain signature 35 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo02g01100 330 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 319 IPR027725 -
Blo02g01100 330 SUPERFAMILY Winged helix DNA-binding domain 32 124 IPR036390 -
Blo02g01100 330 ProSitePatterns HSF-type DNA-binding domain signature. 74 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01100 K09419 HSFF; heat shock transcription factor, other eukaryote - mnt:21393846 368.622
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01525 Blo-Chr1:54833431 Blo02g01100 Blo-Chr2:41938089 6.83E-58 dispersed
Blo02g01100 Blo-Chr2:41938089 Blo15g00160 Blo-Chr15:1640142 1.18E-90 dispersed
Blo02g01100 Blo-Chr2:41938089 Blo12g00960 Blo-Chr12:27732009 1.75E-50 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo18g00282 . 17 245 HSF AT4G17750 52.1 7.8e-58 221.9
Blo05g00378 . 38 238 HSF AT4G17750 54.2 1.2e-55 214.5
Blo17g00285 . 39 225 HSF AT4G17750 53.7 8.1e-55 211.8
Blo02g00237 . 9 207 HSF AT4G17750 52.7 2.0e-53 207.2
Blo01g01525 . 17 115 HSF AT4G17750 71.7 4.0e-38 156.4
Blo12g00960 BCT,CCT 734 832 HSF AT4G17750 69.7 2.6e-37 153.7
Blo02g01100 . 30 125 HSF AT4G17750 70.8 9.9e-37 151.8
Blo02g00983 . 35 271 HSF AT5G16820 64.7 4.0e-67 252.7
Blo05g00378 . 37 244 HSF AT5G16820 53.5 1.4e-56 217.6
Blo18g00282 . 40 226 HSF AT5G16820 55.8 5.1e-54 209.1
Blo02g00237 . 11 206 HSF AT5G16820 53.1 1.6e-52 204.1
Blo18g00282 . 25 226 HSF AT1G32330 52.2 6.0e-55 212.2
Blo02g00237 . 3 189 HSF AT1G32330 50.7 3.2e-48 189.9
Blo01g01525 . 15 114 HSF AT1G32330 70.0 2.0e-37 154.1
Blo12g00960 BCT,CCT 732 831 HSF AT1G32330 68.0 1.3e-36 151.4
Blo18g00282 . 40 228 HSF AT3G02990 55.4 1.2e-55 214.5
Blo02g00237 . 11 209 HSF AT3G02990 52.9 5.5e-53 205.7
Blo01g01525 . 5 130 HSF AT3G02990 58.9 2.5e-37 153.7
Blo17g00285 . 30 246 HSF AT2G26150 58.3 3.9e-72 268.9
Blo11g00264 BCT 7 382 HSF AT4G18880 50.6 3.1e-89 325.9
Blo01g01525 . 14 129 HSF AT4G18880 62.1 1.8e-36 150.6
Blo02g00237 . 5 475 HSF AT4G13980 55.1 1.5e-127 453.4
Blo18g00282 . 26 254 HSF AT3G22830 56.0 4.4e-67 252.3
Blo17g00285 . 30 232 HSF AT3G22830 53.3 9.0e-60 228.0
Blo05g00378 . 26 314 HSF AT3G51910 51.6 4.2e-69 258.5
Blo16g00980 BCT 167 373 HSF AT5G54070 51.0 1.4e-50 197.2
Blo15g00160 . 14 120 HSF AT4G36990 63.6 4.0e-38 155.6
Blo12g00576 . 13 112 HSF AT4G36990 65.0 1.7e-36 150.2
Blo02g01100 . 26 326 HSF AT4G11660 52.3 7.2e-80 294.7
Blo01g01525 . 13 116 HSF AT4G11660 75.0 1.7e-44 177.2
Blo12g00960 BCT,CCT 730 833 HSF AT4G11660 71.2 1.6e-42 170.6
Blo12g00576 . 13 111 HSF AT4G11660 70.7 4.0e-38 156.0
Blo12g00576 . 18 212 HSF AT2G41690 54.6 4.9e-45 178.3
Blo01g01525 . 16 340 HSF AT1G46264 56.8 3.8e-91 332.0
Blo12g00960 BCT,CCT 733 1057 HSF AT1G46264 54.6 2.3e-88 322.8
Blo15g00160 . 17 115 HSF AT1G46264 72.7 4.7e-41 165.6
Blo12g00576 . 15 112 HSF AT1G46264 69.4 2.8e-38 156.4
Blo02g00237 . 5 102 HSF AT1G46264 70.4 8.3e-38 154.8
Blo05g00378 . 20 140 HSF AT1G46264 61.2 1.2e-36 151.0
Blo16g01032 . 6 179 HSF AT3G24520 64.4 3.6e-59 225.7
Blo01g00509 CCT 1 163 HSF AT3G24520 69.9 3.7e-56 215.7
Blo08g00287 CCT 6 175 HSF AT3G24520 57.1 8.1e-51 198.0
Blo18g00282 . 17 245 HSF AT4G17750 52.1 7.8e-58 221.9
Blo05g00378 . 38 238 HSF AT4G17750 54.2 1.2e-55 214.5
Blo17g00285 . 39 225 HSF AT4G17750 53.7 8.1e-55 211.8
Blo02g00237 . 9 207 HSF AT4G17750 52.7 2.0e-53 207.2
Blo01g01525 . 17 115 HSF AT4G17750 71.7 4.0e-38 156.4
Blo12g00960 BCT,CCT 734 832 HSF AT4G17750 69.7 2.6e-37 153.7
Blo02g01100 . 30 125 HSF AT4G17750 70.8 9.9e-37 151.8
Blo02g00983 . 35 271 HSF AT5G16820 64.7 4.0e-67 252.7
Blo05g00378 . 37 244 HSF AT5G16820 53.5 1.4e-56 217.6
Blo18g00282 . 40 226 HSF AT5G16820 55.8 5.1e-54 209.1
Blo02g00237 . 11 206 HSF AT5G16820 53.1 1.6e-52 204.1
Blo18g00282 . 25 226 HSF AT1G32330 52.2 6.0e-55 212.2
Blo02g00237 . 3 189 HSF AT1G32330 50.7 3.2e-48 189.9
Blo01g01525 . 15 114 HSF AT1G32330 70.0 2.0e-37 154.1
Blo12g00960 BCT,CCT 732 831 HSF AT1G32330 68.0 1.3e-36 151.4
Blo18g00282 . 40 228 HSF AT3G02990 55.4 1.2e-55 214.5
Blo02g00237 . 11 209 HSF AT3G02990 52.9 5.5e-53 205.7
Blo01g01525 . 5 130 HSF AT3G02990 58.9 2.5e-37 153.7
Blo17g00285 . 30 246 HSF AT2G26150 58.3 3.9e-72 268.9
Blo11g00264 BCT 7 382 HSF AT4G18880 50.6 3.1e-89 325.9
Blo01g01525 . 14 129 HSF AT4G18880 62.1 1.8e-36 150.6
Blo02g00237 . 5 475 HSF AT4G13980 55.1 1.5e-127 453.4
Blo18g00282 . 26 254 HSF AT3G22830 56.0 4.4e-67 252.3
Blo17g00285 . 30 232 HSF AT3G22830 53.3 9.0e-60 228.0
Blo05g00378 . 26 314 HSF AT3G51910 51.6 4.2e-69 258.5
Blo16g00980 BCT 167 373 HSF AT5G54070 51.0 1.4e-50 197.2
Blo15g00160 . 14 120 HSF AT4G36990 63.6 4.0e-38 155.6
Blo12g00576 . 13 112 HSF AT4G36990 65.0 1.7e-36 150.2
Blo02g01100 . 26 326 HSF AT4G11660 52.3 7.2e-80 294.7
Blo01g01525 . 13 116 HSF AT4G11660 75.0 1.7e-44 177.2
Blo12g00960 BCT,CCT 730 833 HSF AT4G11660 71.2 1.6e-42 170.6
Blo12g00576 . 13 111 HSF AT4G11660 70.7 4.0e-38 156.0
Blo12g00576 . 18 212 HSF AT2G41690 54.6 4.9e-45 178.3
Blo01g01525 . 16 340 HSF AT1G46264 56.8 3.8e-91 332.0
Blo12g00960 BCT,CCT 733 1057 HSF AT1G46264 54.6 2.3e-88 322.8
Blo15g00160 . 17 115 HSF AT1G46264 72.7 4.7e-41 165.6
Blo12g00576 . 15 112 HSF AT1G46264 69.4 2.8e-38 156.4
Blo02g00237 . 5 102 HSF AT1G46264 70.4 8.3e-38 154.8
Blo05g00378 . 20 140 HSF AT1G46264 61.2 1.2e-36 151.0
Blo16g01032 . 6 179 HSF AT3G24520 64.4 3.6e-59 225.7
Blo01g00509 CCT 1 163 HSF AT3G24520 69.9 3.7e-56 215.7
Blo08g00287 CCT 6 175 HSF AT3G24520 57.1 8.1e-51 198.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004116 2 2 2 0 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12066 PF00447 HSF_DNA-bind 9.20E-33 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g01100 Blo_Chr02 FPKM 9.340609 9.16596 11.311236 12.419952 6.882274 5.79676 5.383824 18.872942 18.915121 17.542637