Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01112 ATGAGAGGACTCTTTCCTCTCGTCGATCCTCGTCGTCAATGGTCGTCACGGGTGGAAGAGATTTTCATTGCGCTGGAAGGAAGCTCGATTGCGAGGATGATGAGTGATTACAAGGTGGAGATGATCAACGATAGCATGCAAGAGTTCTATGTGGATTTCCATGGACCTAAAGACAGCCCATATCAAGGGGGTGTGTGGAGGATAAGAGTGGAGTTGCCTGATGCTTATCCTTATAAATCACCATCTATTGGCTTTATCAACAAAATGTATCATCCAAATGTTGATGAAATGTCCGGCTCTGTTTGTTTAGACGTTATCAACCAGACGTGGAGCCCCATGTTCGACCTTGTAAATGTGTTTGAAGTGTTCCTCCCCCAGCTTCTATTGTATCCCAACCCATCAGACCCGTTGAATGGAGAAGCAGCGGCCCTAATGATGCGCGATCGTACGACTTACGAACAACGAGTGAAAGAGTACTGTGAGAAATATGCAAAGCCAGAAGAGAATGGAGCTGAGGAGGAAGAAAAATCGAGCGAGGAGGAGCTGAGCGAAGATGATTAG 561 46.35 MRGLFPLVDPRRQWSSRVEEIFIALEGSSIARMMSDYKVEMINDSMQEFYVDFHGPKDSPYQGGVWRIRVELPDAYPYKSPSIGFINKMYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTTYEQRVKEYCEKYAKPEENGAEEEEKSSEEELSEDD 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 42178803 42182458 - BLOR10842 Blo02g01112 57342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01112 186 SUPERFAMILY UBC-like 31 165 IPR016135 -
Blo02g01112 186 SMART ubc_7 21 165 - -
Blo02g01112 186 Pfam Ubiquitin-conjugating enzyme 33 159 IPR000608 -
Blo02g01112 186 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA 30 185 - -
Blo02g01112 186 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 90 106 IPR023313 -
Blo02g01112 186 Gene3D Ubiquitin Conjugating Enzyme 24 178 IPR016135 -
Blo02g01112 186 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 13 165 IPR000608 -
Blo02g01112 186 CDD UBCc 33 160 IPR000608 -
Blo02g01112 186 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 30 185 - -
Blo02g01112 186 MobiDBLite consensus disorder prediction 162 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01112 K10576 UBE2H, UBC8; ubiquitin-conjugating enzyme E2 H [EC:2.3.2.23] - jre:108997476 278.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01112 Blo-Chr2:42178803 Blo13g00049 Blo-Chr13:741623 4.51E-76 dispersed
Blo02g01112 Blo-Chr2:42178803 Blo15g00101 Blo-Chr15:853914 2.87E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g14 Blo02g01112 . Bda06g00114 Bda08g00514 Bpe05g00648 . Bma07g01664 . Cmo06g01099 . . . Car02g01207 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00821 Bma12g00072 . . . . . Car06g00910 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000389 3 10 1 5 4 3 5 3 3 3 3 3 5 4 4 4 3 4 5 3 4 3 3 4 4 3 4 10 11 3 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g01112 Blo_Chr02 FPKM 29.794579 31.803637 59.613319 64.788383 36.337234 32.326515 32.602631 32.184986 35.868603 41.028847