Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01116 ATGAAGAAATACAGTCGTAAGATCTCACGCCACTGGATCAAATCCTTGGTTTCTCATGGCCTCCATCCCCAAGCTCTCGAGGCCTCTACTTCCTTTCTCCCGAATCCCCTTCTTACTGATCAATCATATGCCCTCTTCCTTAAATCCGGCCATTCTCTCCACCCCTTCCTCTCCGCCTCCCTTATATCTCACTTCTCCCAATTCGGAGACTTTTCTCGTTCTTATCGATTCCTCTGCGACACCCAGTCCCCAGATATAGTTAATTTCAACGTTCTCATTTCTGGGTTTGCTCGTGTTGGTCAAACCCAATTGGTTTTCGAGCTCTTTGATGAGTTGAGACATTTGGGTCTTGAGCCCGATGTGTTTACTTTGAGTTCGTTGGTTAAAGGTTGCGATAATGTTGAAGAGAATGAGATTGCTCATGGAGTTGCTTTCAGATTGGGGTTTGATTCGGGAGCCTATTTAGTCAGTGGATTTATTGAAAATTATGCTAGAGCTGGGGATATTTTATCGGCTGAAAAATGTTTCGAGGATTGCTTGGTTGCAGAAGCTGTGGTTTCTACTACTATGGTTTGTGGTTACGTATGGAATGGTGAGTACGAGAAAAGTAAGGAGATATTTATGGAAATGACTGAAATGAGTTTGGAAATAAACGAGTTTAGTTGCACTGGTGTGCTTGGAGGAATTTTTTATGGGGAAGAAGGAAAGCAAATTCACGCACTGACTATAAAAAAGGGTTTATTGTTTGGGTGTTCGATTCATTTGAACAATGCAATTATAAATATGTATTCTAGATGTGGTTATAAATCTGATGCAGCGAAAGTGTTCGATGAAATGAGTGCACCAGATATTGTCTCTTGGACTGAAAGAATTGGGGCTGCTCTGGATGAAGGGGAAGCTTTGGGATGTTTTCAATATCTACGGGCCAGAGATTTTGAGTTGAACGAGTATACTATCGTTAATCTTCTTTCAGTAGTTACAAGCTCTAGAATGTTATTGTCTGGTAAGCAAATTCAAGCACATTGTCATAAAGATGGACATTTGCTATGTATTTCTGTCAGCAATCATTTAATATCTATGTATAGCAAACATGGGCAAATGGACGAGGCTAAGCTTGTATTCAATGACATGGTATCTATAGATTCTGTTTCTTGCAATTCTCTTATTGTTGGCTATTCTGAGAATGGACTTCTTAATGAGACTTTCACGACATTCTCTCAAATGCGTCTTTTTTCATTTCTCCCTGATTTATATACTCTTGTTAACATTCTAAAAGCTGTCGCAAAATCAAAGTCTCCAAAACTGGCAATGCAAATCCATTGTCATATTGTAAAATTCAGATTTGCGGCTGATCGTTCTATCGTCACTTCTCTTATAATATCTTATGGGAAATGCAATAGGATTGATGAAGCAAAAAGGGTATTTTATGAGATGGATAAACCAAAGCTAGAACATCTTAAAGCACTGTCCACTGTTTTTGTCCATATTGGTCTTCAAGTGGATGCTCTGAATTTGTTTAATGTATCAAGGGGATTAGACCTAGAAGTTGACGTGGCTTCTTTCAGTATTGCCATTAAAGCTTGTGGGGCTATGACAGGTCTTGAGCAAGGAAGAGAAATTCACTCTCTAGTTATCAGATCTGGTTTTGATCAAGAAATCTTTATTCAAAGTGCTCTTATTGATATGTATTGTAAAAGTGGAAGTTTAACAGAAGCAGAAAAAATCTTCAAAAGTACATCGGATAATTTGGCAGCTTGGAATGCCATGATCATGGGATATTCTTACCATGGTCAGTCTAATGAAGTCTTCTCAATTTTCAATAAGATGGTTGAAAATGGACTAAAACCCGATGAGATTACCTTTCTCGGAGTTTTGACATCTTGCCGCCATTCTGGGCTGGTAAAGGAAGCACGTTTTTACTTAAACTCTATGTTTGCACTACATGGAGTCATTCCTCAACTAGAGCACTATGCCAGTGTGGTTGATTTGCTTGGTCGGGTTGGACTTTTAGAGGAAGCAAAAAGGATTATTGATGAAATGCCTATTCGCTGTGATGCTCATATGTGGCAGATTCTTCTATCAGCCTGTAGCATACATAAAAATGTTGATCTAGGGAGTCTAGCTGCACGAAAACTTCTTGACCTGCAGCCTGGAAATGAAACTGCGTATCTCCTTCTCTCAAACATTCATGCTTCGGCAGGTACGTGGAACTCTGTCCAGGAATTGAGGAAAGAAATGAAGGAAAAAATTGTCCATAAGGAACCGGGTTTTAGTTCGATTCAAGTTGGAAGAGTGGTAAATTTCTTTTTGGCTGGTGATACATCACATCTTAAGAATGACGAGATATACACAGAGCTAAAAAAGTTATATATGCAGATTTGTTCATATCCCAGATTAGAACTAGAGGATGCATTTGAAATGGGTTTACAAACTGTGTGA 2439 39.07 MKKYSRKISRHWIKSLVSHGLHPQALEASTSFLPNPLLTDQSYALFLKSGHSLHPFLSASLISHFSQFGDFSRSYRFLCDTQSPDIVNFNVLISGFARVGQTQLVFELFDELRHLGLEPDVFTLSSLVKGCDNVEENEIAHGVAFRLGFDSGAYLVSGFIENYARAGDILSAEKCFEDCLVAEAVVSTTMVCGYVWNGEYEKSKEIFMEMTEMSLEINEFSCTGVLGGIFYGEEGKQIHALTIKKGLLFGCSIHLNNAIINMYSRCGYKSDAAKVFDEMSAPDIVSWTERIGAALDEGEALGCFQYLRARDFELNEYTIVNLLSVVTSSRMLLSGKQIQAHCHKDGHLLCISVSNHLISMYSKHGQMDEAKLVFNDMVSIDSVSCNSLIVGYSENGLLNETFTTFSQMRLFSFLPDLYTLVNILKAVAKSKSPKLAMQIHCHIVKFRFAADRSIVTSLIISYGKCNRIDEAKRVFYEMDKPKLEHLKALSTVFVHIGLQVDALNLFNVSRGLDLEVDVASFSIAIKACGAMTGLEQGREIHSLVIRSGFDQEIFIQSALIDMYCKSGSLTEAEKIFKSTSDNLAAWNAMIMGYSYHGQSNEVFSIFNKMVENGLKPDEITFLGVLTSCRHSGLVKEARFYLNSMFALHGVIPQLEHYASVVDLLGRVGLLEEAKRIIDEMPIRCDAHMWQILLSACSIHKNVDLGSLAARKLLDLQPGNETAYLLLSNIHASAGTWNSVQELRKEMKEKIVHKEPGFSSIQVGRVVNFFLAGDTSHLKNDEIYTELKKLYMQICSYPRLELEDAFEMGLQTV 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 42333697 42336135 + BLOR10846 Blo02g01116 57346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01116 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 451 485 IPR002885 -
Blo02g01116 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Blo02g01116 812 Gene3D Tetratricopeptide repeat domain 40 148 IPR011990 GO:0005515
Blo02g01116 812 Pfam E motif 699 761 IPR046848 -
Blo02g01116 812 Pfam PPR repeat 257 279 IPR002885 -
Blo02g01116 812 Pfam PPR repeat 383 409 IPR002885 -
Blo02g01116 812 Pfam PPR repeat 557 577 IPR002885 -
Blo02g01116 812 Pfam PPR repeat 187 213 IPR002885 -
Blo02g01116 812 Pfam PPR repeat 455 479 IPR002885 -
Blo02g01116 812 Pfam PPR repeat 657 680 IPR002885 -
Blo02g01116 812 Pfam PPR repeat 355 379 IPR002885 -
Blo02g01116 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 85 119 IPR002885 -
Blo02g01116 812 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 582 616 IPR002885 -
Blo02g01116 812 Gene3D Tetratricopeptide repeat domain 340 430 IPR011990 GO:0005515
Blo02g01116 812 Gene3D Tetratricopeptide repeat domain 243 339 IPR011990 GO:0005515
Blo02g01116 812 Gene3D Tetratricopeptide repeat domain 532 633 IPR011990 GO:0005515
Blo02g01116 812 Gene3D Tetratricopeptide repeat domain 149 237 IPR011990 GO:0005515
Blo02g01116 812 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 9 802 - -
Blo02g01116 812 TIGRFAM PPR: pentatricopeptide repeat domain 585 618 IPR002885 -
Blo02g01116 812 TIGRFAM PPR: pentatricopeptide repeat domain 355 379 IPR002885 -
Blo02g01116 812 TIGRFAM PPR: pentatricopeptide repeat domain 456 479 IPR002885 -
Blo02g01116 812 TIGRFAM PPR: pentatricopeptide repeat domain 383 416 IPR002885 -
Blo02g01116 812 TIGRFAM PPR: pentatricopeptide repeat domain 89 121 IPR002885 -
Blo02g01116 812 PANTHER REPEAT SUPERFAMILY PROTEIN, PUTATIVE-RELATED 9 802 - -
Blo02g01116 812 Gene3D Tetratricopeptide repeat domain 634 796 IPR011990 GO:0005515
Blo02g01116 812 Gene3D Tetratricopeptide repeat domain 431 531 IPR011990 GO:0005515
Blo02g01116 812 Pfam PPR repeat family 582 628 IPR002885 -
Blo02g01116 812 Pfam PPR repeat family 84 131 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01116 - - - qsu:112032565 976.852
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01116 Blo-Chr2:42333697 Blo13g00628 Blo-Chr13:28811923 1.92E-08 dispersed
Blo02g01116 Blo-Chr2:42333697 Blo08g00213 Blo-Chr8:2487371 9.74E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g27 Blo02g01116 . . Bda08g00510 Bpe05g00653 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0800 . . . . . . . . . . . Bma05g00825 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016667 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g01116 Blo_Chr02 FPKM 53.383732 57.42696 57.852306 57.409454 56.732468 55.030231 54.084888 113.145912 112.928169 108.726746