Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01122 ATGGCAGGAGACATTCATGGTCAATATTCTGACCTCTTGCGGCTTTTTGAATACGGTGGATATCCACCTGATGCAAATTATTTATTCTTGGGGGATTATGTAGATCGTGGTAAGCAGAGCATTGAGACCATCTGTCTCCTCCTTGCCTACAAAATAAAATACAAGGAGAATTTCTTTCTTTTGAGGGGCAATCACGAATGTGCTTCCATCAATCGAATATATGGATTCTATGACGAATGCAAGAGGAGATTTAGTGTTCGTATATGGAGAACATTTACCGAATGCTTTAACTGTCTGCCTGTGGCTGCCCTAATAGATGAGAAAATCCTTTGCATGCATGGCGGACTGTCTCCTGATTTAAAGAACTTGGATCAGATTAGGAATCTTGCTCGTCCTGTTGATGTGCCAGATCATGGTCTTGTATGTGATTTACTATGGGCAGATCCTGACAAGGATATTGACGGGTGGGGAGAGAACGACCGGGGTGTATCATTTACATTTGGTTCAGATAAGGTTGCTGAATTTCTTCAAACACATGACCTTGATCTCATTTGTCGAGCTCACCAGGTAGTTGTGGAAGATGGCTATGAGTTCTTTGCTAAACGGCAGCTGGTAACTATATTTTCAGCTCCCAATTACTGTGGGGAGTTTGACAATGCTGGTGCTTTGATGAGTGTGGATGATACATTGACATGCTCCTTCCAGATTCTTAAATCTTCAGAGAAAAAATTAAGATTAGGACAGAGCACCAACGCTGCAAGACCTGGAACTCCACCTCACAAGGGTATTGATTATGCAGCTGGGAATAATGAGGTTCTTGCCGGAGCTCAACAATTAGCTGCAATGTTGACACAGGAAACGCATTTGTCTGAGGAGTGGTGTCAAGAGCTCCATCAATTTCTCACAAGGATGGTTGTGAAGGCCCTCGTAAGTCGTCTCTACAATGCCGGAATCTCTCTCGAGTCGCTGGATCTGTTTCTTGACGTTGCATGTGTGATAGAAGTCATTGAAGCAGAAGCAGGAGATGGCATGTTTTCTTTGTTGAAAGTGGGAAAATTACTGTTGTTTTCCGTGTTTTTCAATTTCGGAAACTTGTTCCGGGTGCTTCCGGCGAGAGAGTTCCGGCGAGTGGGGTGGGCGTGGTTGTGGTCCAATGAATTAACGAGGAATTTGGACCGATTGGATTCTCAATCGTTTGATCTTTGTTTAGCTATTACTAAACCAATTGAGGGAGCGATCGGAATCAATGATTTGCAAGTGATGCAGGGGGCGTTCCGGCGATCTTCGCGTGAGGCAGTAGGGGAGGGGGAAATGGCGGTTCACGCTGGACCTGCCGAAGGCCATGGTCTAGCTTGTGGTTCAGTTTCCTTCCCTGGTTCTGGCTCTGGATGA 1392 45.11 MAGDIHGQYSDLLRLFEYGGYPPDANYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRFSVRIWRTFTECFNCLPVAALIDEKILCMHGGLSPDLKNLDQIRNLARPVDVPDHGLVCDLLWADPDKDIDGWGENDRGVSFTFGSDKVAEFLQTHDLDLICRAHQVVVEDGYEFFAKRQLVTIFSAPNYCGEFDNAGALMSVDDTLTCSFQILKSSEKKLRLGQSTNAARPGTPPHKGIDYAAGNNEVLAGAQQLAAMLTQETHLSEEWCQELHQFLTRMVVKALVSRLYNAGISLESLDLFLDVACVIEVIEAEAGDGMFSLLKVGKLLLFSVFFNFGNLFRVLPAREFRRVGWAWLWSNELTRNLDRLDSQSFDLCLAITKPIEGAIGINDLQVMQGAFRRSSREAVGEGEMAVHAGPAEGHGLACGSVSFPGSGSG 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 42440427 42450793 - BLOR10852 Blo02g01122 57352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01122 463 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP1 ISOZYME 3 2 263 - -
Blo02g01122 463 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2 263 - -
Blo02g01122 463 PRINTS Serine/threonine phosphatase family signature 94 120 IPR006186 GO:0016787
Blo02g01122 463 PRINTS Serine/threonine phosphatase family signature 123 150 IPR006186 GO:0016787
Blo02g01122 463 PRINTS Serine/threonine phosphatase family signature 27 54 IPR006186 GO:0016787
Blo02g01122 463 PRINTS Serine/threonine phosphatase family signature 180 200 IPR006186 GO:0016787
Blo02g01122 463 PRINTS Serine/threonine phosphatase family signature 60 84 IPR006186 GO:0016787
Blo02g01122 463 PRINTS Serine/threonine phosphatase family signature 203 219 IPR006186 GO:0016787
Blo02g01122 463 SUPERFAMILY Metallo-dependent phosphatases 3 245 IPR029052 -
Blo02g01122 463 SMART pp2a_7 1 241 IPR006186 GO:0016787
Blo02g01122 463 Pfam Calcineurin-like phosphoesterase 3 189 IPR004843 GO:0016787
Blo02g01122 463 ProSitePatterns Serine/threonine specific protein phosphatases signature. 61 66 IPR006186 GO:0016787
Blo02g01122 463 Gene3D - 1 249 IPR029052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01122 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] - gmx:100790490 507.294
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g01122 Blo03g00225 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01122 Blo-Chr2:42440427 Blo03g01153 Blo-Chr3:37930435 1.90E-153 dispersed
Blo13g00314 Blo-Chr13:17362609 Blo02g01122 Blo-Chr2:42440427 1.88E-06 transposed
Blo19g00288 Blo-Chr19:18032207 Blo02g01122 Blo-Chr2:42440427 5.70E-06 transposed
Blo02g01122 Blo-Chr2:42440427 Blo03g00225 Blo-Chr3:5076071 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g50 Blo02g01122 Blo03g00225 Bda06g00121 Bda08g00504 Bpe05g00660 Bpe07g00095 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0815 Cone9ag0815 . . . . . . . . . . Bma05g00834 Bma12g00065 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000122 12 6 9 10 10 5 9 5 6 6 6 6 9 6 6 8 6 16 7 6 6 6 6 6 6 6 5 12 7 7 221
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g01122 Blo_Chr02 FPKM 8.249919 9.090864 8.297151 9.022495 4.840701 3.771518 4.659229 8.192697 7.545555 7.691164