Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01137 ATGGCGTCAAAGCGGATCTTGAAGGAGCTCAAAGATCTTCAAAAGGATCCTCCTACCTCATGTAGCGCAGGCCCAGTTGCGGAAGACATGTTCCATTGGCAAGCAACGATCATGGGTCCACCTGACAGTCCCTATGCAGGTGGAGTGTTCCTTGTTACTATTCATTTTCCTCCAGACTATCCATTTAAACCACCGAAGGTGGCATTCAGGACCAAGGTTTTTCATCCCAATATCAACAGCAATGGTAGCATCTGTCTTGATATACTGAAGGAACAATGGAGTCCTGCACTTACCATTTCCAAGCGGATATGTGTTTTGCTGTCAATCTGTTCACTATTAACAGACCCAAATCCTGATGATCCCTTGGTGCCAGAGATTGCCCACATGTACAAAACAGACAGGAACAAGTATGAAACGACAGCAAGAAGCTGGACCCAGAAGTATGCAATGGGTTGA 456 45.83 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKRICVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 42764944 42766940 + BLOR10867 Blo02g01137 57367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01137 151 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 150 IPR000608 -
Blo02g01137 151 SMART ubc_7 4 150 - -
Blo02g01137 151 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Blo02g01137 151 SUPERFAMILY UBC-like 2 150 IPR016135 -
Blo02g01137 151 Gene3D Ubiquitin Conjugating Enzyme 1 151 IPR016135 -
Blo02g01137 151 CDD UBCc 3 145 IPR000608 -
Blo02g01137 151 Pfam Ubiquitin-conjugating enzyme 5 144 IPR000608 -
Blo02g01137 151 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 148 - -
Blo02g01137 151 PANTHER BNAA01G32320D PROTEIN 3 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01137 - - K06689 fve:101297588 308.916
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01137 Blo-Chr2:42764944 Blo09g00044 Blo-Chr9:704628 5.66E-107 dispersed
Blo05g00578 Blo-Chr5:14074636 Blo02g01137 Blo-Chr2:42764944 1.04E-21 dispersed
Blo06g00146 Blo-Chr6:5745917 Blo02g01137 Blo-Chr2:42764944 1.10E-19 dispersed
Blo15g00101 Blo-Chr15:853914 Blo02g01137 Blo-Chr2:42764944 1.84E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g99 Blo02g01137 . . Bda08g00487 Bpe05g00677 . . . . . . . Car02g01180 . . . Cpe05g00618 . . . . . . . . . . . . . . . Cone12ag0264 Cone6ag0831 Cone9ag0830 . Csa05g00222 Chy09g01278 . . . Bda07g01917 . . . Bma05g00850 . . Cmo02g01437 . . . . . . Cpe13g00124 Bhi12g00166 . . Lac11g2026 Hepe06g1497 . Lcy12g1590 . . . . . . . Lsi09g00193 . . Cme09g01822
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000093 10 14 5 8 10 8 7 6 4 8 8 6 9 8 9 10 7 11 12 3 8 8 10 7 4 8 8 13 15 7 251
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g01137 Blo_Chr02 FPKM 30.39831 30.564188 29.685162 31.611021 36.053646 33.749973 39.109871 26.848059 26.493982 28.364933