Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01141 ATGGCCGATGGTTCGAAATTTCGGCTGGTTCGTTGCCCGAAGTGCGATAATCTCTTGCCTGAGAATCCGAATTACACTGTTTACCAATGTGGTGGCTGTGGAGCTGTTCTAAAAGCGAAGAAGAAAGCTAATGTGAATGATGGTTTTGTGGAGAAGTCTGATGGGGAGATAAGTAGGTATAAAAATGACAAGTTTGAGTATTTATCAGAGAAAGGAAATAGTAGTTTAGGCTCTACTTCAGACGGGGTGATGGAGAGTCCAAGTGTGGAGCAAAGTAACCGAAAAGGTATAGTTTTTGGACACAGAACGGTCAATTTTCCTCATAATTCCTCTGGATCAGAGAATCAAAAGGGCACGAAGGGATTCGGGCTTCATCCAAGCGAACCAAGGAAAGACATGAGATATGTCGACGAGGATGATCATTTATCAAATCTTCGTGTTAACGATTGGGTCCGTCGATATAATCTTCACGAAAGGTCGGACTCAGAAAATCTAAGTATAGAGAAAGATATTGGAGGAAATCCAATATCATCGCCTATTCACAATTCTATGGGGACCTTTCGGGCTGGAGAAAACATTGAGAGAAATGGATATTCAAATTTTTTGGAAAAATCTTGGGTGGCCGATGATCGAAATAGAAATCCTTATTATGGTTATCCCGACGAAGGATCATCGAGCAATACATCAGATGCACATTATGGCTATAGTGGGAATATATGGAACAATGGCATTCCAATGAAGCCTAATTTGGGGCCGAATTTGGAACAAGATCCAGCCGAAATAATGAGGACAATAGATGAGTTGAAAGATCGACTCAGCAGATATTGTGGGGCTGTGGAGAAACCTAGGTTCGATAATGATAGGGCATTTCCTGATCGTTATTATTATGACAAAGTCTCGAGGCCACAAACCCGTGAAAATTTTGACCTGCCAAGACGGGAGGGTCAATTTCCAGTGCAAATGAATATGCAGCCTTTCGATCAATCATCTTATGCGTACCAAACACGACTGTCTCGAGAATATGATTTAGGACGAAGAATGGATGTTAGTGAATCCCATACGCCCATGAACAATTGGTTTGCTCACCATTCAGCTTGTTCTTGTTTGGACTGTGTTCCCCCACCAAATCCTCAAAACCCATTTAATCCGAGAAATCCAAGAGATATGCTTAGTACCAATTTAAACCATTACAGCTCTCCTATTCTGCATGGGACTCCTGGTAGAAATTCCACTCCACTGCAAGAACTAATGGCTCGGGAAAGATGGGGGAGTGACCATGAATCGGACATTGATATTTCAAGTGGACTGCAAAGGCCAGTGATGAGACGAAAAAAAGAACAATATTGTCGATCGATAGCCGGTGGGGCTCCGTTCATTGCATGCTATAATTGCTTCGAGTTGCTGAAATTGCCTAGAAATCTTATAAAGGGGAAGAATAAAGTGAAGTGTGGAGCTTGTTCTTTTATCATTGGCGTTGACATTGAGAAGAAAAGGCTTATTATTCGCAGTCCTAAAGAATCCAACTTACAATCTTCTGAGCTCGATGAGGATTCAAACTACAGATCTGATGATTTTGTTAATTCAGGTAATAAATCTCACAATTTGAAAACTTCTGAGCAGAAGTCGACGGTAGAAGATCGAGAATCGAAGTTGAGTTTACCAGAGAAGAAGCAGAGTTTCAGTTCTTCTGAAGGAGGAGAGGAGAGTCCATCTCACCTTACTGTGCAGCAAAATACTCCTAATTCTGCTGAAGCCATTTTATCTTCTACGAAAGAGGCTCCATCTTCGGAAGACCATTCAGATTGTTCATCCAAGCATGTTGGAGATCATGAGGGGACGCAATCAAATCGTACCAGAAACGTTCATTATAAGATTCAGTTTTTGGAAAATTCTATGGAAGATGTTTCTGAATCCTCGGAGTTGGAAGATTCTTTCGATGAATACCCAAATACTCATACTTCGCAGGACTCTGCTGAGATAGATAAAGAAGAAGATCAAACCAAGAACAGCAATGGCGATGAGATCATTTTAGCTGATCAAGTCAAAAAACAAAATGTTTTGGTTAATGGGCGCCCCATCCCAGATCATCTCGTTAAAAAGGCTGAAAATTTGGCTGGACCAATTCTTCCCGGAGATTACTGGTATGATTACCAGGCAGGATTCTGGGGTGTAATTGGCCATCCATGTCTTGGCCTAATTCCTCCATACATTGAAGAGTTCAACCGTCCCATGCCGACCAATTGTGCAGCAGGAAATACGGGAGTGTACATAAACGGGAGAGAACTAAATCAAAACGATCTGGACTTGCTCTCTGGACGAGGATTGCCGACCACTAGAGACAGATTTTATATCCTCGACATCTCCGGGAGAGTTCGGGACGAAGATTCCGGCGAAGAGTTGTGCTCCTTGGGAAAACTTGCCCCCACGTATGGTCCCCTGTTTAATCCCTCTATAAATACTTTTCTGTACGCCTGCGTTGTTCATCCTTCTCTCCCTCTCTTTCTCTCCCTCATGGCGGATGCTGCAATCGCCCATATGTCTGTCAATGGAGGAAATGTTCAAACGAAGAAACCAAGGAACAGTCGGAAGGCACTGAAGGAGAAAAATCCTTCACCGAATGAGGCAATCAGCATCAACGACAACGCTCCTCCTACGATTCCCGAATTATCCAATGATGATCCGGCGAAGGAGAACCATGAGAGCCTCTCTCAGACTCGATCTTCAGCTAAGAAAGGGAAATCGAAAGCTCCTTCGAAGAAACAGACCAAACTATCCTTTGACAAGGAATTGCAAGAAATGCAGGAGATGCTTCAGAAAATGACGCTCGAGAAAGAAAAGACCGAGGAGCTTCTGAAAGCTAAAGATGAAATGATAAAGCTGAAGGACGAAGAGCTTGAAACGCGTGGAAAAGAGCAGGAGAAGCTTCAGGTGGAGTTGAAGAAGTTGCAGAAATTGAAGGAATTTAAACCTATCATGACTTTCCCTACAGTTCAATCCCTAAAAGACAAAGAGCTGGAAAACAAAGAGAAGAAGAAGGGATGCCATGAAAAGAAAAGGCCTCCTCCACCCTACGTATTATGGAGTAAAGATCAATGGAATGAGATCAAGAAGGAGAATCCGGAGGCAGAATTTAAAGAAATCTCTAACATATTGGGGGCGAAGTGGAAAAATGTCACTGTGGAAGAGAAAATGCCGTATGAACAGAAGTATCAGGCTGAAAAGGAAGCCTATTTGCGGATAGTTGCCAAAGAGAAACGCGAAAGTGAAGCAATGAAACTATTGGAGGAGGAGCAGAAACAGAAGATTGCAATGGAGCTTCTTGAACAATATCTCCAGTTCAAACAAGAAGCAGAGAAAGAGAAAAAGAAGATGAAGAAAGAAAGAGATCCATCGAAACCCAAGCAGCCAATGTCTGCATTTTTCCTCTTCTCTAACGAGAGGCGTTCAGCTCTGCTTTCAGTGAACAAAAACGTCATGGAGGTTTCGAAGATCTTGGGTGAAGAGTGGAAGAATATAACAGAAAAGCAGAGATCGCCATATGAAAAGATGGCTGAGAAGAACAAGGAAAAGTATTTGGAAGAAATGGAAGTTTACAGACTGAAGAAAGAGGAAGAAGCTGAAATTGTCAGGAAGGAGGAGGAAGAGCAACTGAAGCTTCAGAAACAAGAAGCTCTGCAACTGCTGAAGAAGAAGGAGAAAACCAATGAAATAATCAAGAAAACGAGAGAAGATCGTCAGAAGAAGAAGAAAGAGAAGGAAGAGAAGAAGAACGCGGACCCCAACAAGCCCAAAAAGCCTGCCTCGTCTTTCCTTTTATTCAGTAAAGAAGCCAGAAAGAACTTGTCAGAGGAGAGGCCTGGGATCAACAACTCCACTCTTAATGCTTTGATTTCGTTAAAGTGGAAGGAGATGAATGAAGAAGAAAGAAAGATATGGAATGATAGAGCGGCAGAATTAATGGATGCCTACAAAAAGGAAATGGAGGAATACAGTAAGTCAGTGGCTGTAACAGAGAAGAACAAAGCAAATGCATGA 4035 42.35 MADGSKFRLVRCPKCDNLLPENPNYTVYQCGGCGAVLKAKKKANVNDGFVEKSDGEISRYKNDKFEYLSEKGNSSLGSTSDGVMESPSVEQSNRKGIVFGHRTVNFPHNSSGSENQKGTKGFGLHPSEPRKDMRYVDEDDHLSNLRVNDWVRRYNLHERSDSENLSIEKDIGGNPISSPIHNSMGTFRAGENIERNGYSNFLEKSWVADDRNRNPYYGYPDEGSSSNTSDAHYGYSGNIWNNGIPMKPNLGPNLEQDPAEIMRTIDELKDRLSRYCGAVEKPRFDNDRAFPDRYYYDKVSRPQTRENFDLPRREGQFPVQMNMQPFDQSSYAYQTRLSREYDLGRRMDVSESHTPMNNWFAHHSACSCLDCVPPPNPQNPFNPRNPRDMLSTNLNHYSSPILHGTPGRNSTPLQELMARERWGSDHESDIDISSGLQRPVMRRKKEQYCRSIAGGAPFIACYNCFELLKLPRNLIKGKNKVKCGACSFIIGVDIEKKRLIIRSPKESNLQSSELDEDSNYRSDDFVNSGNKSHNLKTSEQKSTVEDRESKLSLPEKKQSFSSSEGGEESPSHLTVQQNTPNSAEAILSSTKEAPSSEDHSDCSSKHVGDHEGTQSNRTRNVHYKIQFLENSMEDVSESSELEDSFDEYPNTHTSQDSAEIDKEEDQTKNSNGDEIILADQVKKQNVLVNGRPIPDHLVKKAENLAGPILPGDYWYDYQAGFWGVIGHPCLGLIPPYIEEFNRPMPTNCAAGNTGVYINGRELNQNDLDLLSGRGLPTTRDRFYILDISGRVRDEDSGEELCSLGKLAPTYGPLFNPSINTFLYACVVHPSLPLFLSLMADAAIAHMSVNGGNVQTKKPRNSRKALKEKNPSPNEAISINDNAPPTIPELSNDDPAKENHESLSQTRSSAKKGKSKAPSKKQTKLSFDKELQEMQEMLQKMTLEKEKTEELLKAKDEMIKLKDEELETRGKEQEKLQVELKKLQKLKEFKPIMTFPTVQSLKDKELENKEKKKGCHEKKRPPPPYVLWSKDQWNEIKKENPEAEFKEISNILGAKWKNVTVEEKMPYEQKYQAEKEAYLRIVAKEKRESEAMKLLEEEQKQKIAMELLEQYLQFKQEAEKEKKKMKKERDPSKPKQPMSAFFLFSNERRSALLSVNKNVMEVSKILGEEWKNITEKQRSPYEKMAEKNKEKYLEEMEVYRLKKEEEAEIVRKEEEEQLKLQKQEALQLLKKKEKTNEIIKKTREDRQKKKKEKEEKKNADPNKPKKPASSFLLFSKEARKNLSEERPGINNSTLNALISLKWKEMNEEERKIWNDRAAELMDAYKKEMEEYSKSVAVTEKNKANA 1344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 42830702 42842051 + BLOR10871 Blo02g01141 57371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01141 1344 Gene3D High mobility group box domain 1003 1083 IPR036910 -
Blo02g01141 1344 Gene3D High mobility group box domain 1118 1199 IPR036910 -
Blo02g01141 1344 MobiDBLite consensus disorder prediction 594 617 - -
Blo02g01141 1344 SUPERFAMILY HMG-box 1125 1202 IPR036910 -
Blo02g01141 1344 Pfam Probable zinc-ribbon domain 453 492 IPR021480 -
Blo02g01141 1344 MobiDBLite consensus disorder prediction 851 926 - -
Blo02g01141 1344 MobiDBLite consensus disorder prediction 1002 1023 - -
Blo02g01141 1344 MobiDBLite consensus disorder prediction 892 906 - -
Blo02g01141 1344 CDD HMGB-UBF_HMG-box 1018 1079 - -
Blo02g01141 1344 MobiDBLite consensus disorder prediction 1118 1137 - -
Blo02g01141 1344 Coils Coil 923 963 - -
Blo02g01141 1344 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 1133 1199 IPR009071 -
Blo02g01141 1344 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 1263 1331 IPR009071 -
Blo02g01141 1344 MobiDBLite consensus disorder prediction 1118 1133 - -
Blo02g01141 1344 MobiDBLite consensus disorder prediction 1002 1025 - -
Blo02g01141 1344 CDD HMGB-UBF_HMG-box 1263 1328 - -
Blo02g01141 1344 SMART hmgende2 1016 1086 IPR009071 -
Blo02g01141 1344 SMART hmgende2 1262 1332 IPR009071 -
Blo02g01141 1344 SMART hmgende2 1132 1200 IPR009071 -
Blo02g01141 1344 Gene3D High mobility group box domain 1243 1343 IPR036910 -
Blo02g01141 1344 Pfam HMG (high mobility group) box 1263 1331 IPR009071 -
Blo02g01141 1344 Pfam HMG (high mobility group) box 1133 1199 IPR009071 -
Blo02g01141 1344 Pfam HMG (high mobility group) box 1018 1079 IPR009071 -
Blo02g01141 1344 MobiDBLite consensus disorder prediction 506 620 - -
Blo02g01141 1344 SUPERFAMILY HMG-box 1008 1079 IPR036910 -
Blo02g01141 1344 MobiDBLite consensus disorder prediction 656 670 - -
Blo02g01141 1344 MobiDBLite consensus disorder prediction 523 537 - -
Blo02g01141 1344 MobiDBLite consensus disorder prediction 538 554 - -
Blo02g01141 1344 MobiDBLite consensus disorder prediction 555 593 - -
Blo02g01141 1344 MobiDBLite consensus disorder prediction 506 522 - -
Blo02g01141 1344 MobiDBLite consensus disorder prediction 872 886 - -
Blo02g01141 1344 MobiDBLite consensus disorder prediction 1230 1271 - -
Blo02g01141 1344 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 853 1340 - -
Blo02g01141 1344 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 1017 1085 IPR009071 -
Blo02g01141 1344 CDD HMGB-UBF_HMG-box 1133 1196 - -
Blo02g01141 1344 Coils Coil 1103 1127 - -
Blo02g01141 1344 SUPERFAMILY HMG-box 1258 1334 IPR036910 -
Blo02g01141 1344 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 853 1340 IPR044601 GO:0003677
Blo02g01141 1344 Coils Coil 1181 1258 - -
Blo02g01141 1344 MobiDBLite consensus disorder prediction 1230 1262 - -
Blo02g01141 1344 Coils Coil 1313 1340 - -
Blo02g01141 1344 MobiDBLite consensus disorder prediction 107 131 - -
Blo02g01141 1344 MobiDBLite consensus disorder prediction 633 673 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01141 K09273 UBTF; upstream-binding transcription factor - tcc:18606663 555.058
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01141 Blo-Chr2:42830702 Blo03g00247 Blo-Chr3:5315132 0 dispersed
Blo02g01141 Blo-Chr2:42830702 Blo01g01637 Blo-Chr1:56197879 3.65E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g110 Blo02g01141 . . . Bpe05g00682 . . . Cmo06g01054 . . . . . . Cpe14g00471 . . . . . . . . Cla07g01414 Cam07g1515 Cec07g1611 Cco07g1571 Clacu07g1503 Cmu07g1473 Cre07g1850 . . Cone6ag0840 Cone9ag0837 . . . Cme07g01579 . . . . . . Bma05g00858 . . . . . Cma16g00555 Car06g00867 . . . . . . . . . . . . . . . . . . Csa04g00643 Chy07g01167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013737 1 1 1 1 1 0 2 0 0 1 0 0 0 1 1 0 0 2 2 0 1 1 1 1 1 1 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12071 PF00505 HMG_box 3.80E-15 CL0114 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g01141 Blo_Chr02 FPKM 2.375 0.0 2.826343 1.713757 0.0 0.981589 0.887797 1.185733 2.273633 2.252233