Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01143 ATGCAAGAAGTACAAACGCATATGGCAACTGCTCGCACAACCACCCAGCCATCTCATCCATCAGTATCTCATACATCTTCCGATGCCGGTCCAGACGGATGCCAGTCTCCGATCATCAGGCAACCGTCCCCTCCTCCAACCCTAGCTAAAGTTCAAAAGATTTTGGCCCTAGGTCCTTCAGTGGTGGGTCCTACCGCTCGTCAGAGGATGACAGTGCAAGTGAGTTCATGGCACTTGCACGGAATCAATACGAAGAATAACAAGGAGACGTGTGCTCTCCATTGCGGCTCCAAGGGTGACAAGATATATTCAATCACAACTCTCCTTGTGCCAAAACAATCGGGCGCTCCTGACTATTGCGTGATAACAAATGAGGCGGACAACGCCGTTGTTCAAATAAGGGAGGGTTTGTTGACGATTGGCTGGATCCATTGCCACCCGGAGATGGATTGTTTCATGTCATCGATTGACATGCACACGCAGTATGCGTACGAACAATTGATGCCGGATTCAATTGCAATTGTCATGGCACCTGTGGACAAAAAATGCCAACACAGCATATTTCAAGTCTCCCACCCTGTAGGGTGGTCGGTGATGTCCAAATGCAATGGGCAGGGCTTCCATCTCCACGATCCGTACGATCGAGATGAACTCTACGAGGAGTGCACGAGTGTGGAGATGAGCTCCGATTTGCACTTCAACATCATCGACATCCGAGACGCAGAGCCTTCCATATTTGATGAGGCACCACCTGTTCAGCCACGCCCAGAGGCCCCAGTTCAGCCACTCCCAGAGGCCCCACCTGTTCAGCCACTTGCAACGGTACCACCTGTAACGTATTCTAGATATACAAAAAATGCAGGACGTGCAAGAGGTGCAAGATGTGCAAGAGGTGCAGCACAGGATAAATCAAAGGTAAGTCTGTTGAAGTCTCTCCCCAACGCAGAGACCAAATTAGTGTTATTTCAAGCAGATGTATACAACCCAGATGAGTTTTCTCCTGCCGTTACTGGGTGCGATTACGTATTTCACGTGGCGACGCCATTGCAGCATGATAGTCAAAGCTCCAAGTTCAAGGATACTTGTGAAGCTGCCGTTGCTGGGATGAGAAGTATTGCTGATTCTTGCATTAGATCGCAAACTGTCAAGCGGCTGATATACACTGCCTCTTGTGTCTCATCGTCGCCAATCAAAGAAGATGGAAATGGGTTTAAAGCCTCCTATATGGACGAATCTATTTGGACGCCCCTTGATATTTCCTTAAATAATTCTATTGAAGCTTTACTGGCATATACGAGATCAAAGACTTTAGCAGAGAAAGTGGCACTGAGCTATAATGAGATTGAAAATGCTAAACTTGAAGTAGTAACACTTGCTTGTGGCCTAACAGGAGGAGAAACTCTTGTTTCGTATTTGACCGGTAGTGTTCTATTATTGTTGTCTCCATTTACCGGCAATTTGGATATGTACAAGTCATTGAAATTCTTGCAAGAACTTTGGGGTTCGATTTTACTTGTTCACGTCGAGGATGTTTGTCGGGCACATATCTTCTGCATGGAAAAGCCGTCCATGAAAGGAAGGTTCCTCTGTTCAGCTCTCAACCTGACCATTAAAGACATTGCCATGTATTTCAAAGAAAACTATCCAGAATCCCGCATCTCGGAAGAGTAA 1671 46.62 MQEVQTHMATARTTTQPSHPSVSHTSSDAGPDGCQSPIIRQPSPPPTLAKVQKILALGPSVVGPTARQRMTVQVSSWHLHGINTKNNKETCALHCGSKGDKIYSITTLLVPKQSGAPDYCVITNEADNAVVQIREGLLTIGWIHCHPEMDCFMSSIDMHTQYAYEQLMPDSIAIVMAPVDKKCQHSIFQVSHPVGWSVMSKCNGQGFHLHDPYDRDELYEECTSVEMSSDLHFNIIDIRDAEPSIFDEAPPVQPRPEAPVQPLPEAPPVQPLATVPPVTYSRYTKNAGRARGARCARGAAQDKSKVSLLKSLPNAETKLVLFQADVYNPDEFSPAVTGCDYVFHVATPLQHDSQSSKFKDTCEAAVAGMRSIADSCIRSQTVKRLIYTASCVSSSPIKEDGNGFKASYMDESIWTPLDISLNNSIEALLAYTRSKTLAEKVALSYNEIENAKLEVVTLACGLTGGETLVSYLTGSVLLLLSPFTGNLDMYKSLKFLQELWGSILLVHVEDVCRAHIFCMEKPSMKGRFLCSALNLTIKDIAMYFKENYPESRISEE 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 42873047 42880556 + BLOR10873 Blo02g01143 57373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01143 556 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 84 168 IPR000555 GO:0005515|GO:0008233|GO:0008237
Blo02g01143 556 SUPERFAMILY JAB1/MPN domain 88 194 - -
Blo02g01143 556 MobiDBLite consensus disorder prediction 253 274 - -
Blo02g01143 556 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 301 549 IPR036291 -
Blo02g01143 556 Gene3D Cytidine Deaminase, domain 2 66 241 - -
Blo02g01143 556 PANTHER ANTHOCYANIDIN REDUCTASE-LIKE 302 553 - -
Blo02g01143 556 Pfam NAD dependent epimerase/dehydratase family 300 524 IPR001509 -
Blo02g01143 556 SMART pad1_6 71 193 IPR000555 GO:0005515|GO:0008233|GO:0008237
Blo02g01143 556 Gene3D - 290 556 - -
Blo02g01143 556 MobiDBLite consensus disorder prediction 1 46 - -
Blo02g01143 556 ProSiteProfiles MPN domain profile. 67 205 IPR037518 -
Blo02g01143 556 MobiDBLite consensus disorder prediction 253 275 - -
Blo02g01143 556 MobiDBLite consensus disorder prediction 1 32 - -
Blo02g01143 556 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 302 553 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01143 - - - csin:114258680 340.502
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01143 Blo-Chr2:42873047 Blo18g00696 Blo-Chr18:15248174 1.37E-180 dispersed
Blo02g01143 Blo-Chr2:42873047 Blo16g00741 Blo-Chr16:30083614 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g117 Blo02g01143 . . Bda08g00477 Bpe05g00685 . . Bma14g00556 . . . Cma15g01274 . Car15g01148 . . . . . . . . . . . . . . . . . . Cone12ag0602 . . . Csa05g00211 Chy09g01288 . . . Bda07g00462 . . Bpe11g00712 Bma05g00866 . . . Cmo15g01343 . . . . . Cpe13g00115 Bhi12g00156 . . Lac11g2008 . . Lcy12g1577 Cla01g00195 Cam01g0201 Cec01g0195 Cco01g0200 Clacu01g0197 Cmu01g0193 Cre09g2314 Lsi09g00183 . . Cme09g01832
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003129 0 0 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g01143 Blo_Chr02 FPKM 390.363312 407.982727 559.141479 521.098755 400.637146 433.313019 377.639648 1015.552551 1075.603882 971.661377