Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01150 ATGGCTACCGCTGAGATCTTCTCTTTCTCTCTCTTCTTCTTTTTCTTATTTGTCTGCTTTATTCCTCAAACAGTAAGGTCCGCAATCACCTGCAAAGAATCATTCTGCCGGCAAGGATCGGAGCCGGCGGTTCGTTTCCCTTTCCGATTAGACGATACAAATCAAATTCGCTGTGGCTACGGACAAGATTTCGTTCTTTCATGCGACAGTCAGCGCCGGACAATTTTGAATCTACCATCCTCAGGAAGCTTCGTCGTCACCGACATTGATTACGTGGCCGGCAGCTTGTCGATCAACGATCCCGATGAGTGCCTTCCGAGAAGGTTCCTTCAAAATTTCACTATCGTGGACACGCCATTCCAGATGGATGATTTCGTAAATCTAACCTTCGTCAACTGTTCGAATACCGATGAAACGGCTCTGCCTTTCGAGTCTATAGATTGTCTCAGCGGCGTAAATTTCACTGTCAAGGTCACGCGAACTGATTTTTACGACGAAATTTCTCCCGTTTCACCGTCGTGCTTGTTGATTTCGACGGCTATGGTTCCAGTTATGCGGCGTGGAAGATACTCTAGTCTTAACGCTAATATTACGATGAGTTGGACGAATGCTGATTGCTCTGCGTGCAAAAAGCGCGGTGGAGATTGCGGATTCACAAGTAGTAAGGGTCTGGCAATTGGATGTGCTAATCCTCCAAGCAAAGGTCTGCCGAGAGCAGCCAAATACGGCATAATCTTAGGTGCAGTCATACCTGGGTTTCTCTTCCTTGTGGGGCTGGGTTCTTGCATCTGCGCCAAGGCGAGGGCCTATAGGCAGCGCCACCTGCGCAGCGAGAACATTTCAAGCTCCGGGTCGATGGTGGCGCTAGCCTCCGTTACGGTGGTGGGTCTTGATGAGCCGACGATCGAGTCGTACCCGAAAACTTTTCTGGGAGGGAGTCGCAGACTGCCGAAGCCATACGACGTCACTTGCTCGATATGCTTGTCGGAATACCAACCGGAAGAGACGCTAAGAACTATACCAGCCTGCGCCCATTATTTCCACGCCACGTGTATTGACGAGTGGCTTAAAAGGAATGGCACGTGTCCGTTGTGTCGAAATTCGCCGGACGGGTCCTCTCATACGTCCCTTTCTTCCCCTACGTCGTCGTCTTCTTTACTCTCATTTTCCTCAGCTTAG 1179 49.96 MATAEIFSFSLFFFFLFVCFIPQTVRSAITCKESFCRQGSEPAVRFPFRLDDTNQIRCGYGQDFVLSCDSQRRTILNLPSSGSFVVTDIDYVAGSLSINDPDECLPRRFLQNFTIVDTPFQMDDFVNLTFVNCSNTDETALPFESIDCLSGVNFTVKVTRTDFYDEISPVSPSCLLISTAMVPVMRRGRYSSLNANITMSWTNADCSACKKRGGDCGFTSSKGLAIGCANPPSKGLPRAAKYGIILGAVIPGFLFLVGLGSCICAKARAYRQRHLRSENISSSGSMVALASVTVVGLDEPTIESYPKTFLGGSRRLPKPYDVTCSICLSEYQPEETLRTIPACAHYFHATCIDEWLKRNGTCPLCRNSPDGSSHTSLSSPTSSSSLLSFSSA 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43096774 43099220 - BLOR10880 Blo02g01150 57380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01150 392 SUPERFAMILY RING/U-box 319 368 - -
Blo02g01150 392 SMART ring_2 324 365 IPR001841 -
Blo02g01150 392 MobiDBLite consensus disorder prediction 370 392 - -
Blo02g01150 392 CDD RING-H2_PA-TM-RING 323 366 - -
Blo02g01150 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 370 IPR013083 -
Blo02g01150 392 ProSiteProfiles Zinc finger RING-type profile. 324 366 IPR001841 -
Blo02g01150 392 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 12 385 - -
Blo02g01150 392 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 12 385 - -
Blo02g01150 392 Pfam Ring finger domain 323 366 IPR001841 -
Blo02g01150 392 Pfam Wall-associated receptor kinase galacturonan-binding 31 100 IPR025287 GO:0030247
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01150 - - - jre:108987127 326.635
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00328 Blo-Chr2:3317465 Blo02g01150 Blo-Chr2:43096774 2.27E-61 dispersed
Blo02g01150 Blo-Chr2:43096774 Blo07g01297 Blo-Chr7:33215697 1.39E-20 dispersed
Blo02g01150 Blo-Chr2:43096774 Blo02g00346 Blo-Chr2:3620227 4.82E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g133 Blo02g01150 . Bda06g00147 . Bpe05g00694 Bpe07g00071 . . Cmo06g01042 Cmo16g00596 . . . . . Cpe14g00461 . . . . . . . . . . . . . . . Cone8ag0244 . . . . . . . . . . . . . . Bma12g00608 . . . . Cma16g00544 Car06g00858 . . . . . . . . . . . . . . . . . . Csa04g00658 Chy07g01153 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008451 2 1 1 1 2 1 2 1 1 1 0 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g01150 Blo_Chr02 FPKM 17.590313 18.893368 21.579235 21.890396 15.995554 14.699841 14.905997 23.921738 24.779028 22.917114