Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01158 ATGAGCTCCATTGATGTTCTCTTAGCTCCTAGGGTTTATCTTCTTAGCCCTTCCTCCAGTTTTCGCCAAGCGTACTCTGTTTCGGTTTCATATTGTACTCGGTCCAAGCTTTTGAACTTCACTTCGAATTGTAGGCCTAAATCACCTTTTCTTCCTCGATATCTGAGAATTTCTAGCAAATCAAAATCCAGTTCTTTAGAATCGTCGTCGCCGTCAGGAGAGAGTAGTAAAGCGGGAGATGATTTTGTGACCAGGGTTTTGAAGGAGAATCCCAGTCAGGTGGAACCGAAGTATCTAATTGGCGATAAGTTATACACATTAAAGGAAAAGGAGAAATTGAGCAACAATCATAATGAGAGTGTATTTGAATTGTTTGCGAAAGAGTTGAATCCAAAAGGGAATTCAGAGTGTGAAAATGGCGGGGTTGACAATAGAAGTGGAAGGAAATCTCGTGATGTGTATTTGGAAGACATTTTGAAGGCGTACAAAGGGAAACTTTATGTGCCAGAGCAAGTTTTCAGAGCAGAGTTATCTGAGGAAGAAGAATTCAAAAAGAATTTTGAGGAATTACCAAAAATGAGTTTCGAAGATTTTCAAAAAGCTATGAAAAGCGATAAGATAAAATTGATAACTTCGAGGGAGGGCATAGGAGTATCCTATGGGAATGGCTATATAGATTTCATTGTTGAGCTGAAAGAAATTCCCGGTGACAAGAACTTGCACAGAACCAAATGGTCCATGAGGTTGGATGATATTGAAGCTCAAGGTGTACTAGATGAGTACTCAGGTCCTCGATATGAAATTGAGAAGCATACAGCGTCTTGGGTGGGTAAAATACCAGAATATCCTCACCCTGCAGCTTCTCGGATTTCTAGCAGAATGATGGTAGAGCTTGGAGTGGTGACTGGTGCAATGGCTGCTGCAGCCCTTGTTGTTGGTGGATTCTTGGCTTCTGCTGTATTTGCTGTGACGAGTTTTGCTTTTTTCACTGCTGTTTATGTTGTATGGCCAGTTGTCAGACCGTTTCTCAAACTTTTTCTTGGTCTTTTCATTGGTATGTTTGAAAGAGTTTGGGATAATATTGCTGATTTACTTGGGGAGGGGGGAATCTCCAATAAGTTTTATGAAATTTACACTTTTGGTGGTGTCTCTGCAAGTCTTGAGATGTTGAAACCAATTTTGTTTGTCCTTTTAACCATGGTTCTTCTTGTCCGCTTCACACTTTCAAGGAGACCTAAGAACTTCAGGAAGTGGGATCTGTGGCAAGGTATTGATTTTTCGCGCTCTAAAGCTGAAGCTCGGGTTGATGGTTCAACGGGGGTTAAGTTCAAGGATGTGGCAGGGATTGATGAAGCAGTCGAGGAACTCCAAGAGAATTTCTCTTGGAAGGAAAGAAGGTTCATGCTAAGTTGTTTTTTATATGAAAAAATTGATATTACTTTTGGGAGTGACTTTCTAATAAGAAGGAGAAGATTGGTGAGATACTTGAAGAACCCTGAATTATTTGACAAAATGGGGATCAAACCTCCACACGGAGTTCTTTTAGAGGGGCCTCCTGGATGTGGTAAGACTCTGGTTGCCAAAGCCATAGCTGGTGAAGCTGGTGTTCCATTTTACCAAATGGCGGGATCTGAATTTGTGGAAGTTTTGGTTGGTGTTGGTTCTGCTCGTGTAAGGGATTTATTTAAGAGAGCAAAGTTAAATCTCCCATTGTTATGTGTAAAGCATCCACGTAGCTGCAGTTCATTATTTGGGAATCTGAATGCACTTGTAAACAAGCCATCGGTTATCTTCATTGATGAAATTGATGCATTGGCAACTAGACGACAGGGGATTTTCAAGGAAACCACAGACCATCTCTATAATGCAGCAACTCAGGAGAGGGAAACTACATTGAATCAACTTCTTATAGAGCTTGATGGGTTTGATACTGGAAAAGGTGTGATTTTTTTAGCTGCTACTAATAGAAGGGACTTGTTGGATCCTGCACTTCTCCGACCAGGCCGTTTTGATCGAAAGATAAAAATTCTTCCGCCAGGTGCAAAGGGGAGATTGGATATTCTGAAAATTCATTCCAGCAAAGTAAAAATGTCTGAGTCTGTTGATTTAAGCGTCTGTGCTCGGAATTTACCGGGTTGGACGGGAGCAAGGCTAGCTCAGTTGGTCCAAGAAGCTGCTCTTGTGGCTATTAGGAAGGGGCATGATTCAGTTCTTCAAACAGATTTAGACGATGCTGTTAACAGACTTACAGTAGGTCCAAAACGAGTGGGAATGGAGTTGGGTCATCAGGGACAATGTCGAAGGGCAACTACTGAAATGGGAGTTGCAATGACTTCTCATCTGCTTAGAAGATATGAGAATGCCAAAGTTGAACTGTGTGATCGGATTTCAATCATTCCTCGTGGTCAGCCTCCAGCTTTCTTGTTTGTTGGTCAGCCACTGTCCTATAGACTTGTGCCTTGTTGGGATCCTATTCATTATGAAGTAAGAGCAGTTAATGCAGCTTTAGGATTGTTCATGGCTTCTACATTGTCACAAGTTATATTTCACCGACTTGATGATGAAATGTACATGTTTGAGCGGCGGCCACAATTGCTACATCGTCTTCAGGTTTTACTGGGAGGTAGGGCGGCAGAAGAAGTCATTTATGGACCAGACACATCGAAAGCATCAGTTAGCTACCTTGCTGATGCATCTTGGCTGGCTCGTAAAATTTTAACCATTTGGAATTTGGAGACTCCTATGGTAATCCACGGGGAACCGCCACCATGGAGAAAGGAAGTAGGATTTATTGGTCCAAGGCTAGATTTTGAAGGGTCTCTCTATGATGACTATGGTCTGATTGAACCTCCAGTCAATTTCAACTTAGATGATGAAGTCGCACAAAGGACGGAAGAGCTGATACGAAATATGTATGAAAGGACAGTTTCTCTTCTTAGGAGACACCATGCGGCTTTGCTTAAAGCAGTCAAGGTTCTCCTGAATCAGAAGGAAATTAGCGGGGAAGAAATAGACTACATCTTGAACAACTACCCGCCCCAAACTGCCGTGAGTCGTCTTTTGGAGGAGGAAAACCCAGAACGGATTGAGTTTGTCAAAGCAGACGAAAGTGATGATGAGATAACATCCTTAGCCTTATCTAACTTCTTCCTTCGGCCACCTTGTTGTGAGAGAATGGCTTCTGCCTTTCTCGCAGTAGCATTGCCTCATCAAGCAGCGTTTGGTTCGCGCTCAGTTACCACCTCTGACTTTTGTTTCCATCGTTCGAGGGCTTCTGTCAGCTTTTCGTCTTCTACCTTCGTCTCCTCGCTCTCTTCTTCCTCCTTCTCGTCTTCTTCTGTTGTTGAAGAGGAAGGCGAGAAAGACCGTTCTGAATTCGAGCCGCTTTCTCTGCAGTCTGAATCTTCTATTGTAGACGCCAATAACTCTTCCTCCAGCGGTTGCAGGGCCTGTGGAAGAGAGGAAGTTGAGAAGGGATGCAATGGCGAAGGAAGGATTCAAGGTGGAATTGCAACAGTTCCAGGCTTTGGTTGGTGGCCAATTAAAGCATACAGGCCTTGCCCTGGATTTATAGCATCCGGTGGTAGGTATAAAAGGCGGGGACAAAGCATGGATGAAGTGGCAGGAGGTGGAAGGAGAGGAGCCAAACCAGAAACCAGTAGCAAAGATCAATCTGGGCATAACTATTTATTTGCAGCGAGAGAAAGCCTGGCTTTAAACAATTCAAGAGTTAAAACTGTGGCTGAAAGTGGCGTTGGAAATGATCTGTATGTGGAGCTGTGGAAGGCTTGTGCTGGTCCTCTTGTAGATGTGCCTCTCCTTCATCAGAGGGTGTACTACTTTCCACAAGGTCATATGGCGCAATTAGAGGCATCCACAAATCAGGAGCTGAATCAGACGCCTACTCCTCTATTTAAACTCCCCTCCAAGATTCTTTGTACTGTGATGGACATTCAGCTTCTGGCGGAGCTAGAAACGGAGGAGGTTTATGCACGAGTAACTCTAATTCCAGAACATAATTCAACTGATCCAGATGATCCCGATCCTTGTGTTGTTGAACCTTCAAAGCCAGCAGTGCACTCATTTTGCAAGGTTTTAACAGCATCAGATACTAGCACCCATGGGGGGTTCTCTGTACTTCGTAAACATGCTACTGAATGCCTTCCTCAGTTGGTACTTGCTCGTGCTCTCAATATCACTATCTTCACTTTCGGGCTAAGAGTTTCTCATGTTACCAGCGTGTTTCTTCTTGTTCAAATTTTCAGGTCGAGTCAATTCATTGTGAGCTTGAACAAGTACTTGGAAGCTGTAACCAACAAGTTTGAAGTTGGTATGAGATTTAAGATGAGGTTTGAGGGCGAGGATTCTCCTGAGAGAAGGTTTTCGGGTACCATAGTCAAAGTTGAAGTTATATCTCCTTCTTGGGCAGATTCGTCGTGGAGATCACTGAAAGTTCAATGGGATGAACCCGCATCAATTCCAAGACCTGAGAGGGTTTCTCCTTGGGAGATAGAACCCTTTGTAGCTTCGGCAGCTGCCAATGTTCCTCTACCAGTTGTAGTAAAGAACAAAAGGCCCCGACCACCTACTGAAATCTCAGCTCTTGATTCTACTACATCAACTGTATCCACTCTTTGGCGTTCTGGGTTGAGTCAATCTCATGATAGAAGGCAATTGAGTGTTACCGCTGAAAGCAAACAAAGTGAAAATCTGCTTGTCTGGCGTCATAAACATTCCGATATTAGCAGCAACTCTTTTTCAATGACACAGAATGATGGTCCTTTGTTAGCTTCCCCACATGCAAGTGGTTTGCAGAATCTGAGTCAGGAGGTTACAGAGGATCGCAAAATTCACTCACCTTGGCCTGATTACTCTGGCTATACTACTTTGCATTCATCAAAGCCAGACAATGACTTCAGGGTTGAGAATATGAGGAAGGAGAAGAAAGCTGATATTGGTACTAGCTGCCGTTTGTTTGGTTTTGAGCTGACCAATAATTCTGTTTGTACACCCTGCTCTAGTGAAACTGCTCAGGGGAATGCGGGTAGAATTTCATTGGCCGATTCTGACAAAAAATCTGAGTTTCTGGCCTTGAAAGAAAACAATCAAGAGTTGCTGGAAATATCCGCAAAAGAGATGTTAAGCAAGCAAAGCTGCTCCCCCACCAACATGAGAAGCCGTACCAAAGTTCAAATGCAAGGAATGGCTGTTGGTCGTGCGGTGGACTTAACGAAGCTGAAAGGGTATGATCAGCTGATAGACGAGCTCGAGAAAATGTTTGAAATTAAGGGACAGCTTTGCCCACGAGACAAGTGGGAGATAGTTTTTACAGACGATGAAGGAGACATGATGCTCATGGGAGATGACCCATGGCAGGAATTCTGTAACATGGTGAGAAGAATATTGATATGTTCAAGCGAGGACGTGAAGAAAATGAGCTGCGGAAAGAAATTTCCAATTTCCTCAGCAGAAGGCGAAGGGAGTGTCGCACAGAGTTGGCTGAAATCTGAGTCACAGAAAGCAGAAAGCACTAACTTTATTTAA 5544 43.43 MSSIDVLLAPRVYLLSPSSSFRQAYSVSVSYCTRSKLLNFTSNCRPKSPFLPRYLRISSKSKSSSLESSSPSGESSKAGDDFVTRVLKENPSQVEPKYLIGDKLYTLKEKEKLSNNHNESVFELFAKELNPKGNSECENGGVDNRSGRKSRDVYLEDILKAYKGKLYVPEQVFRAELSEEEEFKKNFEELPKMSFEDFQKAMKSDKIKLITSREGIGVSYGNGYIDFIVELKEIPGDKNLHRTKWSMRLDDIEAQGVLDEYSGPRYEIEKHTASWVGKIPEYPHPAASRISSRMMVELGVVTGAMAAAALVVGGFLASAVFAVTSFAFFTAVYVVWPVVRPFLKLFLGLFIGMFERVWDNIADLLGEGGISNKFYEIYTFGGVSASLEMLKPILFVLLTMVLLVRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFKDVAGIDEAVEELQENFSWKERRFMLSCFLYEKIDITFGSDFLIRRRRLVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARVRDLFKRAKLNLPLLCVKHPRSCSSLFGNLNALVNKPSVIFIDEIDALATRRQGIFKETTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIKILPPGAKGRLDILKIHSSKVKMSESVDLSVCARNLPGWTGARLAQLVQEAALVAIRKGHDSVLQTDLDDAVNRLTVGPKRVGMELGHQGQCRRATTEMGVAMTSHLLRRYENAKVELCDRISIIPRGQPPAFLFVGQPLSYRLVPCWDPIHYEVRAVNAALGLFMASTLSQVIFHRLDDEMYMFERRPQLLHRLQVLLGGRAAEEVIYGPDTSKASVSYLADASWLARKILTIWNLETPMVIHGEPPPWRKEVGFIGPRLDFEGSLYDDYGLIEPPVNFNLDDEVAQRTEELIRNMYERTVSLLRRHHAALLKAVKVLLNQKEISGEEIDYILNNYPPQTAVSRLLEEENPERIEFVKADESDDEITSLALSNFFLRPPCCERMASAFLAVALPHQAAFGSRSVTTSDFCFHRSRASVSFSSSTFVSSLSSSSFSSSSVVEEEGEKDRSEFEPLSLQSESSIVDANNSSSSGCRACGREEVEKGCNGEGRIQGGIATVPGFGWWPIKAYRPCPGFIASGGRYKRRGQSMDEVAGGGRRGAKPETSSKDQSGHNYLFAARESLALNNSRVKTVAESGVGNDLYVELWKACAGPLVDVPLLHQRVYYFPQGHMAQLEASTNQELNQTPTPLFKLPSKILCTVMDIQLLAELETEEVYARVTLIPEHNSTDPDDPDPCVVEPSKPAVHSFCKVLTASDTSTHGGFSVLRKHATECLPQLVLARALNITIFTFGLRVSHVTSVFLLVQIFRSSQFIVSLNKYLEAVTNKFEVGMRFKMRFEGEDSPERRFSGTIVKVEVISPSWADSSWRSLKVQWDEPASIPRPERVSPWEIEPFVASAAANVPLPVVVKNKRPRPPTEISALDSTTSTVSTLWRSGLSQSHDRRQLSVTAESKQSENLLVWRHKHSDISSNSFSMTQNDGPLLASPHASGLQNLSQEVTEDRKIHSPWPDYSGYTTLHSSKPDNDFRVENMRKEKKADIGTSCRLFGFELTNNSVCTPCSSETAQGNAGRISLADSDKKSEFLALKENNQELLEISAKEMLSKQSCSPTNMRSRTKVQMQGMAVGRAVDLTKLKGYDQLIDELEKMFEIKGQLCPRDKWEIVFTDDEGDMMLMGDDPWQEFCNMVRRILICSSEDVKKMSCGKKFPISSAEGEGSVAQSWLKSESQKAESTNFI 1847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43201649 43220993 + BLOR10888 Blo02g01158 57388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01158 1847 PANTHER METALLOPROTEASE M41 FTSH 491 571 - -
Blo02g01158 1847 PANTHER METALLOPROTEASE M41 FTSH 33 458 - -
Blo02g01158 1847 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 441 753 IPR027417 -
Blo02g01158 1847 Gene3D Peptidase M41 751 1016 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Blo02g01158 1847 Gene3D - 1440 1513 - -
Blo02g01158 1847 SUPERFAMILY DNA-binding pseudobarrel domain 1349 1393 IPR015300 -
Blo02g01158 1847 Pfam Auxin response factor 1422 1484 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Blo02g01158 1847 SMART AAA_5 509 680 IPR003593 -
Blo02g01158 1847 Gene3D - 679 749 - -
Blo02g01158 1847 Gene3D - 1721 1813 - -
Blo02g01158 1847 ProSiteProfiles PB1 domain profile. 1725 1817 IPR000270 GO:0005515
Blo02g01158 1847 Pfam AAA+ lid domain 700 743 IPR041569 -
Blo02g01158 1847 Pfam AUX/IAA family 1722 1761 IPR033389 -
Blo02g01158 1847 Pfam AUX/IAA family 1772 1809 IPR033389 -
Blo02g01158 1847 CDD AAA 489 676 - -
Blo02g01158 1847 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 1, CHLOROPLASTIC-RELATED 491 571 - -
Blo02g01158 1847 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 1, CHLOROPLASTIC-RELATED 33 458 - -
Blo02g01158 1847 SUPERFAMILY CAD & PB1 domains 1720 1801 - -
Blo02g01158 1847 MobiDBLite consensus disorder prediction 1202 1225 - -
Blo02g01158 1847 Pfam ATPase family associated with various cellular activities (AAA) 513 676 IPR003959 GO:0005524|GO:0016887
Blo02g01158 1847 Gene3D - 430 677 IPR027417 -
Blo02g01158 1847 SUPERFAMILY FtsH protease domain-like 852 1009 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Blo02g01158 1847 Gene3D - 1359 1416 IPR015300 -
Blo02g01158 1847 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 1, CHLOROPLASTIC-RELATED 589 1039 - -
Blo02g01158 1847 PANTHER METALLOPROTEASE M41 FTSH 589 1039 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01158 - - - cpap:110812353 1338.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01158 Blo-Chr2:43201649 Blo04g00702 Blo-Chr4:6440244 1.68E-83 dispersed
Blo06g00975 Blo-Chr6:33043786 Blo02g01158 Blo-Chr2:43201649 7.23E-116 transposed
Blo02g01158 Blo-Chr2:43201649 Blo03g00258 Blo-Chr3:5469379 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g157 Blo02g01158 . . Bda08g00460 Bpe05g00703 . . . . . . . . . . . . . . . . . . . Cla07g01090 Cam07g1408 Cec07g1253 Cco07g1230 Clacu07g1155 Cmu07g1134 Cre07g1514 . . . . . . . Cme07g01540 . . . . . . Bma05g00887 . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00673 Chy07g01137 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012472 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g01158 Blo_Chr02 FPKM 51.104847 51.679977 80.990974 83.498611 45.208897 41.56221 47.683395 72.574043 70.296997 81.482002