Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01161 ATGGGTTTTCCTCAAACTCCAAATGCTCCTCGCCTCTACCCTCAAGCACTCCAGCTCAAACTCTACCAGGCCTTCATTTTCTCCATCCCTATTCTCTTCTCCATCATTCTCTTCCTGTTGTTTTACCTCTTCTACCTCAAGAGGAGAGCTTCTTCTCTTTCCTCCTCTGCTCCAATCCTTCCGACCAGCACTAATCAAGCTCCGATGACTCATTATACTGCTCCGGTGGGTTTGAAAGGTGATCTAATAGACAAGCTTCCCAAGGTAATATTTGAAGAGGAATTCAGGGCCAGAGACTCGATATGTTGTGTTTGCTTGGGAGAATATGAACTGAAGGAGGAGCTGGTTCAGGTCCCATCATGCAGGCACATGTTTCATATGGAATGTATACATCACTGGCTCCACTCAAACGCAGCTTGTCCACTATGTAGATCCCCTGTTCTTCCCACTACAGATAAAGCCTCCAATCTCCGACCGCCACCTGCTTCCTCCGGCGACCCATTAGATCCTTCTGTCTTGTCTCATGATTATAGTATCTGCTGA 543 46.96 MGFPQTPNAPRLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSAPILPTSTNQAPMTHYTAPVGLKGDLIDKLPKVIFEEEFRARDSICCVCLGEYELKEELVQVPSCRHMFHMECIHHWLHSNAACPLCRSPVLPTTDKASNLRPPPASSGDPLDPSVLSHDYSIC 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43262871 43264156 - BLOR10891 Blo02g01161 57391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01161 180 MobiDBLite consensus disorder prediction 154 180 - -
Blo02g01161 180 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 18 153 - -
Blo02g01161 180 SUPERFAMILY RING/U-box 82 151 - -
Blo02g01161 180 SMART ring_2 102 143 IPR001841 -
Blo02g01161 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 149 IPR013083 -
Blo02g01161 180 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 18 153 - -
Blo02g01161 180 Pfam Ring finger domain 102 144 IPR001841 -
Blo02g01161 180 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01161 K19039 ATL7_58_59; E3 ubiquitin-protein ligase ATL7/58/59 [EC:2.3.2.27] - egr:104441678 186.422
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g01161 Blo03g00259 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01161 Blo-Chr2:43262871 Blo11g00488 Blo-Chr11:4502163 2.02E-17 dispersed
Blo02g01161 Blo-Chr2:43262871 Blo03g00259 Blo-Chr3:5474864 1.18E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g177 Blo02g01161 Blo03g00259 . Bda08g00456 Bpe05g00706 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g00928 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010674 2 1 1 0 1 1 1 0 1 0 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g01161 Blo_Chr02 FPKM 114.234627 128.734787 71.63588 68.810501 38.159283 34.981792 38.724464 10.928638 11.321528 12.766159