Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01162 ATGCCCCAAACCCAGTCCCCTTTCTCGTCGTTAGACTCCATTTCTTTCTCGCACTCCATCAGAACTAACCCTGCGAAATCGAAATTCGACGCTTGCTTCAAGGGTAGCAGCTCCGATTGGGCGCAGCGATTTTCGTTAAATGGTCAAACAATGGATTACTCACCCTCTTTCTTTGAAGAAGGATTTGGGTCGGAGGACGAGCCGTCTTCGCCAACAATTTCCGGCCTTACTGCTCTTGAGGTTAAGGAGGATCCGCCATGTCCTCCGGGGCTCAGAAAGTACGAGAGCATGATTGTTTTACGGCCCGATATGTCGGAAGCTGAGCGGCTCTATCTCACCCAGAAATACGAGGAGTTGCTTGTTGCCGGGGGAGGCATGTACACGGAAGTTTTCAACAGAGGAGTTATTCCTGTAGCCTATGGCATCAAGAAGAAAAACAAAGCTGGAGAATCTAACACATACGTGGACGGCATCTACCTCCTCTTTACCTACTGTACAAAACCCGAATCCATGGAAATTCTCGAGGAAACTCTGAAAGCAGACGATGATGTTATTCGGGCAGTGAGTTTCGAGATCAGAAAAAGAAAGTATTAG 594 47.98 MPQTQSPFSSLDSISFSHSIRTNPAKSKFDACFKGSSSDWAQRFSLNGQTMDYSPSFFEEGFGSEDEPSSPTISGLTALEVKEDPPCPPGLRKYESMIVLRPDMSEAERLYLTQKYEELLVAGGGMYTEVFNRGVIPVAYGIKKKNKAGESNTYVDGIYLLFTYCTKPESMEILEETLKADDDVIRAVSFEIRKRKY 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43265588 43266814 - BLOR10892 Blo02g01162 57392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01162 197 PANTHER 30S RIBOSOMAL PROTEIN S6 ALPHA, CHLOROPLASTIC 3 197 - -
Blo02g01162 197 Hamap 30S ribosomal protein S6 [rpsF]. 91 194 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Blo02g01162 197 Pfam Ribosomal protein S6 93 188 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Blo02g01162 197 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 3 197 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Blo02g01162 197 Gene3D - 90 197 IPR014717 -
Blo02g01162 197 SUPERFAMILY Ribosomal protein S6 91 194 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01162 K02990 RP-S6, MRPS6, rpsF; small subunit ribosomal protein S6 - zju:107429801 242.276
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01162 Blo-Chr2:43265588 Blo03g00259 Blo-Chr3:5474864 1.28E-98 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g185 Blo02g01162 . . . . Bpe07g00059 . . . . Cma02g00919 . Car02g00669 Car15g01252 . . . . . . . . . . . . . . . . . Cone8ag0235 Cone12ag0240 . . . . . . . . . . . . . Bma12g00618 . Cmo02g00927 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012141 0 1 2 1 1 1 2 1 0 1 1 1 1 1 1 2 0 2 2 0 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g01162 Blo_Chr02 FPKM 47.432724 49.336899 72.583977 73.805542 41.745438 43.840481 45.751518 59.131863 55.850925 56.008865