Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01163 ATGCCCGAACCGGAGCTCGACAGTCCGGCTGTCTTTCCTCTCAAAACGACGGTCGATGATAGGGACCCACTCATGGACTTTGATATCGATATGGGCAGCCCATGGCCTTTGGATCAGATGTCTCCCATCCTTATCTCTTCCTCCGATCAGCCTTTCTCTCCGCTCTGGGCTTTCTCCGACGGAGAAGACGACGGGGACGGAAAACTTCATCTCCATTCCCGCTCAGTCCGCGGTATAAGTAATTTGAACTCGGTGTCTCAAAAGCCGACCCATAAAACTGAAACAAGAGTTCTTCAACTTCCCCCTCTATGGGGACTTGCATCAATGGAGAATCCAGATGGGTGCTGCTTAATTAAAGAGAAAATGACTCGGGCCCTCAGATACTTGAAAGAATTGACAGACCAACACGTTCTAGCTCAGGTTTGGGCGCCCGTCAAGAGCGGCGGCCGATATATGCTTACCACACTCGAACAACCCTTTGTTCTCGACGCACGAAAGAATGGGCTTCATCAGTATCGAATGGTCTCTCTGATGTACATGTTCTCGGTCGATGGAGAAACCGATGGAGTTCTCGGACTTCCCGGCCGAGTTTTCAAGCAGAAATTGCCAGAATGGACTCCAAATGTGCAGTTTTACTCGAGCAAAGAGTATTCCAGACGGAATCACGCCCTTCACTATAATGTCCAAGGAACTTTAGCCTTGCCTATCTTCGAGCCGTCTGGGCAAACCTGTATTGGTGTACTAGAGCTCATTATGAACTCTCCCAAAATCAATTATGCACCTGATGTCGACAAAGTCTGCAAAGCTCTCGAGGCCGTAAACTTGAAAAGCTCGGAAATCTTGGACCATCCGAAGACACAGGTCATTAGCTACTATATACTCTTGGCAATGCTTTTGAACCAGATTTGCAACGAAGGTCGCCGAAATGCATTGGTTAAAATTTTGGAGGTACTTACAGTTGTATGCGAAAGTCACAAATTACCACTGGCTCAAACCTGGGTTCCTTGCAGGCATGGAAGTGTTCTTGCCAATGGTGGTGGTTTGAAGAAGAGCTGTTCTAGCTTTGATGGCAGTTGTAGAGGCCGAGTGTGCATGTCCGCAACTGATTTAGCATCCTACATAGTCGATGCTCAAGTTTGGGGGTTTAGAGAGGCCTGCCTTGAACACCATTTGCAGAAGGGCCAGGGAGTTGCCGGTCGGGCATTTTTGTCTCAAAGCTCATGTTTTTCGACGGATATTACCCAGTTCTGCAAGACTGAATACCCTTTAGTACACTATGCTCGATTGTTTGAGTTAAAGAGCTGTTTTGCAGTCTGCCTACGTAGTAGTTTTACTGGAGATGATGACTACATTCTTGAATTTTTCCTTCCATCTGCCATAACTGAATACTATGAACAACTGGCTTTGTTGGGATCTTTGTTGGCCACGATGAAACAGCATTTTCAAACCCTAAAGGTTGCGTCTGGAATCAAATTCGAAGAGGGTGAGGTTCTTGTAGAAATCATACAGGCTTCAGCGGATGATGGACTGAGTTCTAGATTCGAATATGTTCGAATACCTCAATCTGTCGAATTGGCCCTAGGGTCTAATGGGGCGACCAATGGTGGAGAGACGTTTGGATTTAATTCAATGAAACAGACGTTAGTGGTGGTTTGTGATAATGAAGAAAACAATGGAGGGGCTGAGAATAAAACCCATAACTCCATTCCTTCCCCTCAGAAGGACAGGAAGAAGACATCTGTGAGAAAACGTGGGAAAACGGAGAAATCGATAAGTTTAGACGTTCTTCAACAATATTTTACAGGAAGCCTTAAGGATGCTGCAAAGTGCCTTGGAGTTTGTCCGACCACAATGAAGCGTATCTGTCGGCAGCATGGAATTTCCCGATGGCCGTCTCGGAAGATCAACAAAGTTAACCGATCACTCTCGAAGCTAAAGCGTGTAATTGAATCTGTGCAAGTTGCTGAAGAAGCATTTGGTTTGACTCCTCTCACTACAAGTACTAGTTCTCCCCCATTCGCCCCGAACAGGTCAACTCAGCGTAGCTCACCCGTCCATAAACCCGGTGAGGAGAAAGAATCATCACTTGTCTCAAAAACACTGAGAAACGAACTAGTTAGGGAAACTTTGCGTTTGGAAGAAGATATTCATGACAAAAGTGGGTTCTTCCCCAAGATTTGTAAAGAGTCGAAGCAGTCTAGAACGAAGAGTGGATCAAGGGAAGAGTCTGCAGGGACCCCTACTTCTCATGGATCTTGCCAAGGAAGTCCTGCTAATGAAAGCTTACTGGCCAAAGATCCACACGTTTTCCCCTATCAGGAACACCCCATCAAAAGAGCAGATTCCCCCGAAAAACTCAATCCAAATGCTGTATTGCTGATTTGTGAAATACCGACAGAAGTCGAAGAACCATTTGGAGCAATGCTTATAGAAGATGCAGGAAGTTCGAAAGATTTAAGAAACCTCTGTCCTTCTGCAGCAGATGCTGTTTTGGACGAGCAAATCCCAGAATCTTGTTGGCAGAATCTTCCCCGTTCAACTCCCACACAATTCATCGATATTGCCGGAACGAGGCAAGAAGCGAAGAGGATGACGATTAAGGCGACATACAAGGAAGATATAATAAGATTTCGCATACCCTTGAGCTCTGGAGTAGTGGAGTTGAAAGAAGAAGTGGCTAAGAGGCTAAAACTGGAGGTGGGCACTTTTGATATAAAATATATAGATGATGATCAAGAATGGGTTCTTATAGCCTGTGATGCAGACCTTCAAGAATGTGCTGATATTTCAAATTCATCAGGCAGTAATATAATTAGGCTCTTGATTCATGACTTATCAACCAATCTTGGAAGCTCTTGCGAGAGCACAGGGGAATGA 2877 45.39 MPEPELDSPAVFPLKTTVDDRDPLMDFDIDMGSPWPLDQMSPILISSSDQPFSPLWAFSDGEDDGDGKLHLHSRSVRGISNLNSVSQKPTHKTETRVLQLPPLWGLASMENPDGCCLIKEKMTRALRYLKELTDQHVLAQVWAPVKSGGRYMLTTLEQPFVLDARKNGLHQYRMVSLMYMFSVDGETDGVLGLPGRVFKQKLPEWTPNVQFYSSKEYSRRNHALHYNVQGTLALPIFEPSGQTCIGVLELIMNSPKINYAPDVDKVCKALEAVNLKSSEILDHPKTQVISYYILLAMLLNQICNEGRRNALVKILEVLTVVCESHKLPLAQTWVPCRHGSVLANGGGLKKSCSSFDGSCRGRVCMSATDLASYIVDAQVWGFREACLEHHLQKGQGVAGRAFLSQSSCFSTDITQFCKTEYPLVHYARLFELKSCFAVCLRSSFTGDDDYILEFFLPSAITEYYEQLALLGSLLATMKQHFQTLKVASGIKFEEGEVLVEIIQASADDGLSSRFEYVRIPQSVELALGSNGATNGGETFGFNSMKQTLVVVCDNEENNGGAENKTHNSIPSPQKDRKKTSVRKRGKTEKSISLDVLQQYFTGSLKDAAKCLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQVAEEAFGLTPLTTSTSSPPFAPNRSTQRSSPVHKPGEEKESSLVSKTLRNELVRETLRLEEDIHDKSGFFPKICKESKQSRTKSGSREESAGTPTSHGSCQGSPANESLLAKDPHVFPYQEHPIKRADSPEKLNPNAVLLICEIPTEVEEPFGAMLIEDAGSSKDLRNLCPSAADAVLDEQIPESCWQNLPRSTPTQFIDIAGTRQEAKRMTIKATYKEDIIRFRIPLSSGVVELKEEVAKRLKLEVGTFDIKYIDDDQEWVLIACDADLQECADISNSSGSNIIRLLIHDLSTNLGSSCESTGE 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43290674 43294142 + BLOR10893 Blo02g01163 57393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01163 958 Pfam PB1 domain 864 944 IPR000270 GO:0005515
Blo02g01163 958 PANTHER PROTEIN NLP8 25 956 IPR045012 GO:0003700
Blo02g01163 958 MobiDBLite consensus disorder prediction 739 759 - -
Blo02g01163 958 MobiDBLite consensus disorder prediction 556 587 - -
Blo02g01163 958 Pfam RWP-RK domain 591 638 IPR003035 -
Blo02g01163 958 MobiDBLite consensus disorder prediction 663 683 - -
Blo02g01163 958 Gene3D - 860 944 - -
Blo02g01163 958 ProSiteProfiles PB1 domain profile. 863 945 IPR000270 GO:0005515
Blo02g01163 958 SMART PB1_new 863 945 IPR000270 GO:0005515
Blo02g01163 958 MobiDBLite consensus disorder prediction 727 762 - -
Blo02g01163 958 SUPERFAMILY CAD & PB1 domains 859 948 - -
Blo02g01163 958 CDD PB1_NLP 864 944 IPR034891 -
Blo02g01163 958 ProSiteProfiles RWP-RK domain profile. 577 658 IPR003035 -
Blo02g01163 958 MobiDBLite consensus disorder prediction 663 699 - -
Blo02g01163 958 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 25 956 - -
Blo02g01163 958 MobiDBLite consensus disorder prediction 684 699 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01163 - - - csv:101212500 1239.56
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g01163 Blo03g00261 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01163 Blo-Chr2:43290674 Blo17g00903 Blo-Chr17:29779574 5.61E-14 dispersed
Blo02g01163 Blo-Chr2:43290674 Blo03g00261 Blo-Chr3:5488587 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g191 Blo02g01163 Blo03g00261 . Bda08g00451 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00891 Bma12g00621 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00684 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo02g01163 BCT 173 958 NLP Transcription Factor Family AT1G64530 51.8 1.4e-211 733.0
Blo03g00261 BCT 173 951 NLP Transcription Factor Family AT1G64530 50.8 4.1e-206 714.9
Blo03g00261 BCT 252 951 NLP Transcription Factor Family AT4G24020 54.5 9.0e-198 687.2
Blo02g01163 BCT 252 958 NLP Transcription Factor Family AT4G24020 53.0 1.0e-196 683.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12074 PF00564 PB1 9.90E-18 CL0072 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g01163 Blo_Chr02 FPKM 14.134228 17.252546 17.940832 14.040204 18.41658 17.530954 17.498888 12.156784 11.533975 10.900573