Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01173 ATGCAAAGATTATGGTCTTGGTCGTTCGACTTTGCTCGGTTAATTCTTTTAGATTCAAATTTGCAGGCTATTCTCTCGGGTTGTTCTGCTGGTGGTTTGACTTCTATTTTGCACTGTGATAACTTCAGATCTCTGCTCCCATCTGCCACGGTTAAATGCCTAGCAGATGCGGGATATTTCATCAATGCGAAGGATGTTTCCGGAGCTTCACATATCGAATCTTTCTACAATGATGTGGTGGAAACTCATAATTCGGCAAAGAATTTGCCCGCAGGCTGCACATCAAAACTAAGACCAGGGTTGTGCTTCTTTCCGCAAAATGTTGCCCCGCATATCCAAACCCCGCTCTTTCTTGTAAATGCAGCATACGATTCATGTCAGATTAAGAACATTTTAGCACCTGGTGTGGCTGATCCGCACGGCCTGTGGCACAACTGCAAGCTCGATATCAAAAGCTGCTCCTCCAGTCAGCTTGCAACCATGCAAGCTTACAGATTGCAGTTCTTAGACGCATTAAACGGGGTGAGAACCTCGCCGTCAAACGGAATGTTTGTAGATGCTTGCTATGCCCACTGCCAGACCGAAATGCAGGAAACATGGTTGAGAGACGATTCCCCTGCGCTTAAAAACACTGGGAAAGAAAATGAAGGAGATGCTTCATTTAGTCAAACTCAAACAGAGAGAGGACAGATGAAATTTGATGGTTATGGAAAGGTCAAACTGGAAAGATCTGCTGAAAGGCCTTACTTATCAGCTGATGTTGAGTTAGATGAATGGGATCCAGGAAGTCTCACTGATGCAGCCCCCAGAGCTGGTAGCCACTCAGCCCAAGCTTCATCTGCTCAGTCACTGAACCCATCAAGTCGCTTCCTTTCTCGCTTTAGGTGCATACCTGGTAGCGTTAGCTTTAGACTAACCAGAGCCACCAGTTTAGGATCTTCAAGTCCCTATCCAGTTTCTTCAACTAGTCTCCCAATATTGGACAGTGAAGATGAGCTTCATTTACAGCCTGGACGTGTTAGAGGCTTGATCAGTCAAGACGAAACTGGGGGAGATTGTGACATACTTCTTTCCTCACAACTTGATGGAACTCCAATGCAATGTTATGGAGATGGCACGGCTGACTTTAGGTTAAATATGAGGGAATTTGGAATTTCTGATTGCACACCATATGATGAAACAATTACTTCTCCACATGACCAAGCTACTAATGTTGATTTTGCAGAAGCAAGAGCCCTTGATTTGGCCGCATGTGTTGATAATACAGTGAGGACTAGCCCAAACATTTACTCCCCTATAATCAATAATGGATCTGAAAATGCTGAGTCTAGACTGTCTGATAGGCAGTGTGGAAATAGAGAACCAATTGAAAGAAATTCCCGTTTCAGCCGAACACTAAGTGTTGGAAGACTTAGAGACAGAGTTCTTCGTAGATCATCATTGTCAGGCTCAACATTATATCCTTTCCAACAAGAGAGAGAAGAGAGAGATGGAAGCCACATCAGTGGTAGGGAAGCCAGGAATGTTGAGAGTAGGGCATCGATGCTTGAAAGTAGTGAATTAACCTCTTCAACTACATTGGGTTATTGCCCTCCCGATTTGTCTAGCTCCTTTTTTAGCATCCAAGATTATGATATGCAGACTACTCGACCAAGAGAATCCAGATATCATGATCTGCTGGAGCATAGGTCTAACTTCCTTGAAAGGAGGAGAAGGATACGGTCCCAGGTTCGGGCTCTTCAGCGCCTGGGAAGCCGATTTGAAAACCTACCTGAACATGAAAGATCATGCATATTATCTGGTCAACATAGATCTGGTCGTTGTACATGTCACCCTAATATTAGGAATTCCAATTTGAATTCAAATTTAAACGACAATACCACTGCCAGGGCCAGCATATCAAGAATTGTCCTATTGGCTGAAGCATTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTCTATCTTCCCGGCCATCAGTATCTGTAATTGGATCTATTCCTGCACCAAACCAAGTTGTGGATTCTTTACCCGTCAAATTATACTCTAAGTTGCACAAACATCAAAATGAGGAGGTTTCCCTGTGTTATATATGTCTTGTGGAGTATGAGGAAGGAGATAGCATGAGAATACTCCCTTGCCATCATGAATTTCATAAATCATGCGTAGACAAATGGCTCAAGGAGATTCATAGGGTATGCCCGCTTTGTAGGGGGGATATTTGCAGATCTGATACAACTGCAGAGAACTAA 2259 43.51 MQRLWSWSFDFARLILLDSNLQAILSGCSAGGLTSILHCDNFRSLLPSATVKCLADAGYFINAKDVSGASHIESFYNDVVETHNSAKNLPAGCTSKLRPGLCFFPQNVAPHIQTPLFLVNAAYDSCQIKNILAPGVADPHGLWHNCKLDIKSCSSSQLATMQAYRLQFLDALNGVRTSPSNGMFVDACYAHCQTEMQETWLRDDSPALKNTGKENEGDASFSQTQTERGQMKFDGYGKVKLERSAERPYLSADVELDEWDPGSLTDAAPRAGSHSAQASSAQSLNPSSRFLSRFRCIPGSVSFRLTRATSLGSSSPYPVSSTSLPILDSEDELHLQPGRVRGLISQDETGGDCDILLSSQLDGTPMQCYGDGTADFRLNMREFGISDCTPYDETITSPHDQATNVDFAEARALDLAACVDNTVRTSPNIYSPIINNGSENAESRLSDRQCGNREPIERNSRFSRTLSVGRLRDRVLRRSSLSGSTLYPFQQEREERDGSHISGREARNVESRASMLESSELTSSTTLGYCPPDLSSSFFSIQDYDMQTTRPRESRYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLPEHERSCILSGQHRSGRCTCHPNIRNSNLNSNLNDNTTARASISRIVLLAEALFEVLDEIHQQSVVLSSRPSVSVIGSIPAPNQVVDSLPVKLYSKLHKHQNEEVSLCYICLVEYEEGDSMRILPCHHEFHKSCVDKWLKEIHRVCPLCRGDICRSDTTAEN 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43410797 43417078 + BLOR10903 Blo02g01173 57403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01173 752 MobiDBLite consensus disorder prediction 270 284 - -
Blo02g01173 752 ProSiteProfiles Zinc finger RING-type profile. 698 740 IPR001841 -
Blo02g01173 752 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 177 750 - -
Blo02g01173 752 MobiDBLite consensus disorder prediction 490 511 - -
Blo02g01173 752 MobiDBLite consensus disorder prediction 260 284 - -
Blo02g01173 752 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 745 IPR013083 -
Blo02g01173 752 Pfam Ring finger domain 698 740 IPR001841 -
Blo02g01173 752 MobiDBLite consensus disorder prediction 205 227 - -
Blo02g01173 752 Pfam Pectinacetylesterase 17 211 IPR004963 GO:0016787
Blo02g01173 752 MobiDBLite consensus disorder prediction 486 511 - -
Blo02g01173 752 SMART ring_2 698 739 IPR001841 -
Blo02g01173 752 SUPERFAMILY RING/U-box 675 745 - -
Blo02g01173 752 MobiDBLite consensus disorder prediction 436 455 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01173 Blo-Chr2:43410797 Blo15g00716 Blo-Chr15:23365620 1.60E-11 dispersed
Blo01g01115 Blo-Chr1:40014037 Blo02g01173 Blo-Chr2:43410797 5.63E-50 transposed
Blo06g00789 Blo-Chr6:31184078 Blo02g01173 Blo-Chr2:43410797 6.18E-56 transposed
Blo07g00404 Blo-Chr7:7197143 Blo02g01173 Blo-Chr2:43410797 2.26E-51 transposed
Blo18g00683 Blo-Chr18:13925275 Blo02g01173 Blo-Chr2:43410797 3.48E-60 transposed
Blo02g01173 Blo-Chr2:43410797 Blo03g00266 Blo-Chr3:5551243 6.24E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01173 - - qsu:112035309 578.941