Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01188 ATGGAAGGCGTACCCCACCCTATACCTCGAACAGTTGAGGAAGTTTTCAGTGACTTCAAAGGCAGACGTTCTGGCTTGATCAAAGCTCTTACCACTGATGTTGAGAAATTTTTTCAACAGTGCGATCCTGGTGGGTTCTCTTTTCTTTCCGTGCCCTTGGAGCGCCTTGACGTCTTATCCGCTTACTGCTTTCTCTGGATGCTTGTCATGTGCGTTTTTTCAGAGAAGGAAAACTTGTGTCTCTATGGACTTCCGAATGAGACATGGGAAGTTAATCTGCCCGTAGAGGAGGTGCCTCCAGAGCTTCCGGAACCAGCATTAGGCATAAACTTTGCTAGGGATGGTATGCAGGAGAAGGATTGGCTGTCATTGGTCGCTGTTCACAGTGATTCATGGTTGCTAGCTGTTTCATTTTATTTTGGTGCACGCTTTGGGTTTGGTAAGAATGAAAGGAAGAGACTTTTCCAGATGATAAATGATCTACCAACTATATTTGAAGTGGTGACAGGGAACGTTAAGCATCCTAAGGAGCAGTCGGCTACTCATAATAACAGCAGCAAAAGCAAATCAAGTGGGAAAATACAATCTCGCCAATCTGAGCCACAGAGCAAGGGAGTAAAGATGTCTCCACCCCCCAAAGAAGATGACGACAGTGGGGAGGAGGAAGAAGATGATGAGCAGGGAGCGACATGTGGTGCTTGTGGAGATAACTACGGAAATGATGAGTTTTGGATTTGTTGCGATGTTTGTGAAAGATGGTTCCACGGGAAATGTGTTAAGATTACGCCTGCAAAGGCAGAGCATATCAAGCAGTACAAGTGCCCAAGTTGCAGTAACAACAAGAGGGCTAGAGTCTGA 858 45.8 MEGVPHPIPRTVEEVFSDFKGRRSGLIKALTTDVEKFFQQCDPGGFSFLSVPLERLDVLSAYCFLWMLVMCVFSEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVSFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNVKHPKEQSATHNNSSKSKSSGKIQSRQSEPQSKGVKMSPPPKEDDDSGEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNNKRARV 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43595719 43599946 + BLOR10918 Blo02g01188 57418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01188 285 CDD PHD_AL_plant 231 280 IPR044104 -
Blo02g01188 285 Pfam Alfin 11 43 IPR021998 GO:0006355|GO:0042393
Blo02g01188 285 Pfam Alfin 74 170 IPR021998 GO:0006355|GO:0042393
Blo02g01188 285 Pfam PHD-finger 231 279 IPR019787 -
Blo02g01188 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 279 IPR013083 -
Blo02g01188 285 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 7 1 44 - -
Blo02g01188 285 MobiDBLite consensus disorder prediction 215 229 - -
Blo02g01188 285 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 7 74 284 - -
Blo02g01188 285 MobiDBLite consensus disorder prediction 174 229 - -
Blo02g01188 285 ProSiteProfiles Zinc finger PHD-type profile. 228 280 IPR019787 -
Blo02g01188 285 MobiDBLite consensus disorder prediction 174 205 - -
Blo02g01188 285 SUPERFAMILY FYVE/PHD zinc finger 220 281 IPR011011 -
Blo02g01188 285 ProSitePatterns Zinc finger PHD-type signature. 231 277 IPR019786 -
Blo02g01188 285 PANTHER CPG BINDING PROTEIN 74 284 IPR045104 GO:0006355|GO:0042393
Blo02g01188 285 PANTHER CPG BINDING PROTEIN 1 44 IPR045104 GO:0006355|GO:0042393
Blo02g01188 285 SMART PHD_3 230 278 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01188 - - - jre:109018723 431.795
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g01188 Blo03g00275 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01188 Blo-Chr2:43595719 Blo17g00276 Blo-Chr17:2903439 1.41E-102 dispersed
Blo02g01188 Blo-Chr2:43595719 Blo03g00275 Blo-Chr3:5650017 6.36E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1243 Blo02g01188 Blo03g00275 Bda06g00180 Bda08g00428 . . . . . . . . . . . Cpe01g00797 Cpe14g00651 . . . . . . . . . . . . . . Cone3ag0883 . Cone13ag0701 . . . . . . . . . . . Bma05g00910 . Sed07g1864 Cmo04g00939 . . . . . . . Bhi11g00926 Tan01g1498 . . . . . Cla10g00714 Cam10g0706 Cec10g0733 Cco10g0716 Clacu10g0742 Cmu10g1556 Cre10g0950 . Csa03g00676 Chy06g01612 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo03g00275 BCT 1 250 Alfin-like Transcription Factor Family AT1G14510 83.6 9.1e-111 396.7
Blo02g01188 BCT 1 284 Alfin-like Transcription Factor Family AT1G14510 74.6 2.9e-109 391.7
Blo17g00276 CCT,ECH 1 246 Alfin-like Transcription Factor Family AT1G14510 67.1 8.5e-93 337.0
Blo13g00799 CCT,ECH 8 238 Alfin-like Transcription Factor Family AT1G14510 59.2 1.8e-79 292.7
Blo12g00390 . 389 618 Alfin-like Transcription Factor Family AT1G14510 60.8 5.9e-78 287.7
Blo04g00232 CCT,ECH 8 229 Alfin-like Transcription Factor Family AT1G14510 60.2 1.3e-77 286.6
Blo16g00972 . 119 325 Alfin-like Transcription Factor Family AT1G14510 72.1 5.5e-76 281.2
Blo01g01452 BCT,CCT,ECH 356 615 Alfin-like Transcription Factor Family AT1G14510 53.4 3.4e-73 271.9
Blo01g00565 . 3 211 Alfin-like Transcription Factor Family AT1G14510 71.3 6.3e-72 267.7
Blo12g01023 BCT,CCT,ECH 15 230 Alfin-like Transcription Factor Family AT1G14510 50.6 4.7e-67 251.5
Blo01g01060 . 5 225 Alfin-like Transcription Factor Family AT1G14510 53.7 3.7e-64 241.9
Blo14g00563 BCT 317 454 Alfin-like Transcription Factor Family AT1G14510 64.0 8.6e-45 177.6
Blo17g00276 CCT,ECH 1 249 Alfin-like Transcription Factor Family AT5G26210 70.6 6.4e-104 374.0
Blo03g00275 BCT 9 252 Alfin-like Transcription Factor Family AT5G26210 74.4 1.0e-93 340.1
Blo02g01188 BCT 9 284 Alfin-like Transcription Factor Family AT5G26210 65.8 8.3e-88 320.5
Blo01g00565 . 3 213 Alfin-like Transcription Factor Family AT5G26210 84.8 3.5e-86 315.1
Blo16g00972 . 119 327 Alfin-like Transcription Factor Family AT5G26210 74.4 1.9e-84 309.3
Blo12g00390 . 386 620 Alfin-like Transcription Factor Family AT5G26210 59.8 4.0e-82 301.6
Blo13g00799 CCT,ECH 7 240 Alfin-like Transcription Factor Family AT5G26210 57.5 3.4e-81 298.5
Blo01g01452 BCT,CCT,ECH 346 617 Alfin-like Transcription Factor Family AT5G26210 54.1 1.1e-79 293.5
Blo04g00232 CCT,ECH 7 236 Alfin-like Transcription Factor Family AT5G26210 56.0 1.1e-76 283.5
Blo12g01023 BCT,CCT,ECH 20 234 Alfin-like Transcription Factor Family AT5G26210 55.0 9.0e-74 273.9
Blo01g01060 . 2 225 Alfin-like Transcription Factor Family AT5G26210 53.4 1.3e-67 253.4
Blo14g00563 BCT 317 432 Alfin-like Transcription Factor Family AT5G26210 75.9 1.3e-48 190.3
Blo17g00276 CCT,ECH 3 248 Alfin-like Transcription Factor Family AT3G42790 66.9 1.7e-93 339.3
Blo03g00275 BCT 9 252 Alfin-like Transcription Factor Family AT3G42790 71.7 7.1e-92 334.0
Blo02g01188 BCT 9 284 Alfin-like Transcription Factor Family AT3G42790 63.8 2.6e-86 315.5
Blo13g00799 CCT,ECH 7 240 Alfin-like Transcription Factor Family AT3G42790 58.1 6.3e-80 294.3
Blo12g00390 . 388 620 Alfin-like Transcription Factor Family AT3G42790 58.1 2.4e-79 292.4
Blo16g00972 . 119 327 Alfin-like Transcription Factor Family AT3G42790 71.8 3.8e-77 285.0
Blo01g00565 . 3 213 Alfin-like Transcription Factor Family AT3G42790 79.1 8.5e-77 283.9
Blo04g00232 CCT,ECH 7 229 Alfin-like Transcription Factor Family AT3G42790 57.7 1.1e-76 283.5
Blo01g01452 BCT,CCT,ECH 346 617 Alfin-like Transcription Factor Family AT3G42790 52.5 9.4e-76 280.4
Blo12g01023 BCT,CCT,ECH 20 234 Alfin-like Transcription Factor Family AT3G42790 54.2 5.3e-71 264.6
Blo01g01060 . 4 225 Alfin-like Transcription Factor Family AT3G42790 53.1 7.4e-65 244.2
Blo14g00563 BCT 317 424 Alfin-like Transcription Factor Family AT3G42790 73.1 8.0e-43 171.0
Blo13g00799 CCT,ECH 1 240 Alfin-like Transcription Factor Family AT5G05610 78.4 4.6e-112 401.0
Blo12g00390 . 386 621 Alfin-like Transcription Factor Family AT5G05610 75.5 3.4e-107 384.8
Blo04g00232 CCT,ECH 1 229 Alfin-like Transcription Factor Family AT5G05610 74.5 4.8e-101 364.4
Blo01g01060 . 2 225 Alfin-like Transcription Factor Family AT5G05610 69.3 1.4e-89 326.2
Blo17g00276 CCT,ECH 8 248 Alfin-like Transcription Factor Family AT5G05610 64.5 4.6e-88 321.2
Blo03g00275 BCT 9 252 Alfin-like Transcription Factor Family AT5G05610 63.5 1.2e-83 306.6
Blo02g01188 BCT 9 281 Alfin-like Transcription Factor Family AT5G05610 57.1 5.1e-79 291.2
Blo16g00972 . 119 327 Alfin-like Transcription Factor Family AT5G05610 61.4 1.6e-72 269.6
Blo01g00565 . 3 213 Alfin-like Transcription Factor Family AT5G05610 59.4 2.6e-67 252.3
Blo12g01023 BCT,CCT,ECH 20 229 Alfin-like Transcription Factor Family AT5G05610 50.2 4.8e-61 231.5
Blo14g00563 BCT 317 462 Alfin-like Transcription Factor Family AT5G05610 59.2 2.1e-40 162.9
Blo13g00799 CCT,ECH 43 240 Alfin-like Transcription Factor Family AT3G11200 81.6 4.9e-95 344.4
Blo12g00390 . 424 621 Alfin-like Transcription Factor Family AT3G11200 78.2 1.8e-89 325.9
Blo04g00232 CCT,ECH 43 229 Alfin-like Transcription Factor Family AT3G11200 75.9 2.1e-85 312.4
Blo01g01060 . 40 225 Alfin-like Transcription Factor Family AT3G11200 70.7 4.8e-74 274.6
Blo16g00972 . 117 327 Alfin-like Transcription Factor Family AT3G11200 62.0 5.9e-72 267.7
Blo17g00276 CCT,ECH 44 248 Alfin-like Transcription Factor Family AT3G11200 61.7 3.8e-71 265.0
Blo02g01188 BCT 72 277 Alfin-like Transcription Factor Family AT3G11200 65.5 1.2e-69 260.0
Blo03g00275 BCT 44 252 Alfin-like Transcription Factor Family AT3G11200 64.1 1.6e-69 259.6
Blo01g00565 . 3 213 Alfin-like Transcription Factor Family AT3G11200 60.8 2.0e-67 252.7
Blo01g01452 BCT,CCT,ECH 416 618 Alfin-like Transcription Factor Family AT3G11200 52.7 2.8e-58 222.2
Blo12g01023 BCT,CCT,ECH 52 229 Alfin-like Transcription Factor Family AT3G11200 50.5 1.5e-51 199.9
Blo14g00563 BCT 319 469 Alfin-like Transcription Factor Family AT3G11200 59.6 9.8e-43 170.6
Blo03g00275 BCT 1 160 Alfin-like Transcription Factor Family AT2G02470 85.6 5.6e-76 281.2
Blo02g01188 BCT 1 192 Alfin-like Transcription Factor Family AT2G02470 71.4 8.4e-72 267.3
Blo17g00276 CCT,ECH 1 158 Alfin-like Transcription Factor Family AT2G02470 74.1 2.1e-62 236.1
Blo13g00799 CCT,ECH 8 153 Alfin-like Transcription Factor Family AT2G02470 67.1 3.5e-54 208.8
Blo12g00390 . 389 536 Alfin-like Transcription Factor Family AT2G02470 66.9 2.3e-53 206.1
Blo04g00232 CCT,ECH 8 136 Alfin-like Transcription Factor Family AT2G02470 72.5 8.7e-53 204.1
Blo01g01060 . 5 171 Alfin-like Transcription Factor Family AT2G02470 58.6 3.3e-52 202.2
Blo01g01452 BCT,CCT,ECH 356 527 Alfin-like Transcription Factor Family AT2G02470 57.4 3.8e-48 188.7
Blo01g00565 . 3 117 Alfin-like Transcription Factor Family AT2G02470 79.1 1.4e-47 186.8
Blo16g00972 . 119 239 Alfin-like Transcription Factor Family AT2G02470 73.6 5.5e-47 184.9
Blo12g01023 BCT,CCT,ECH 15 151 Alfin-like Transcription Factor Family AT2G02470 60.6 2.3e-45 179.5
Blo14g00563 BCT 317 439 Alfin-like Transcription Factor Family AT2G02470 68.5 4.8e-43 171.8
Blo17g00276 CCT,ECH 3 164 Alfin-like Transcription Factor Family AT5G20510 72.2 1.3e-66 249.6
Blo03g00275 BCT 3 165 Alfin-like Transcription Factor Family AT5G20510 71.5 6.3e-64 240.7
Blo02g01188 BCT 3 196 Alfin-like Transcription Factor Family AT5G20510 61.7 5.0e-61 231.1
Blo13g00799 CCT,ECH 7 172 Alfin-like Transcription Factor Family AT5G20510 60.1 1.7e-53 206.1
Blo01g01060 . 4 156 Alfin-like Transcription Factor Family AT5G20510 62.3 6.5e-53 204.1
Blo12g00390 . 388 538 Alfin-like Transcription Factor Family AT5G20510 62.4 1.4e-52 203.0
Blo04g00232 CCT,ECH 7 136 Alfin-like Transcription Factor Family AT5G20510 69.7 1.9e-52 202.6
Blo16g00972 . 119 239 Alfin-like Transcription Factor Family AT5G20510 76.9 1.4e-50 196.4
Blo12g01023 BCT,CCT,ECH 20 162 Alfin-like Transcription Factor Family AT5G20510 62.2 3.9e-50 194.9
Blo01g00565 . 3 117 Alfin-like Transcription Factor Family AT5G20510 78.3 2.0e-49 192.6
Blo01g01452 BCT,CCT,ECH 346 536 Alfin-like Transcription Factor Family AT5G20510 53.1 7.4e-49 190.7
Blo14g00563 BCT 317 439 Alfin-like Transcription Factor Family AT5G20510 68.3 7.7e-46 180.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12076 PF12165 Alfin 4.80E-50 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g01188 Blo_Chr02 FPKM 3.152381 2.459645 6.96329 8.535631 2.863863 1.904239 2.290155 1.411558 0.975099 1.380385