Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01193 ATGACAGACCGCTGCGCGATGGATCGTCCGATTGAAAATGATATTCAAATTGAGGGATTTGCTAGGAATGGTTCCGGAGTTTCAGAGGATAAAGACTGTGTCATGCTCAAGATGAAGGAGCCTCTCCTTTCTAAAGGTAACAGGGTTAATACTACCTCTCAACTTGCCATTGTTGGCGCCAATGTTTGCCCCATCGAAAGCCTCGACTACGAGATTGCCGAGAATGATCTTTTCAAGCAGGACTGGAGATCCAGAACAAAGACAGAGATATTTCAATATGTTATCCTCAAATGGACTCTTGCCCTGCTGATTGGTGTAGGCACGGGCCTTGTTGGCTTCTTCAATAATCTTGCTGTTGAAAACATAGCTGGGTTCAAACTTCTACTCAGTAACAACCTCATGCTTCAGAACAAGTTTTTTCAGGCATTTGTAGCCCTTGCTAGTTGCAACATGGTTTTGGCTATAGCTGCATCCGCACTTTGTGCCTACGTTGCTCCAGCAGCTGCTGGCTCTGGCATACCAGAAGTAAAAGCATACCTCAACGGAGTAGATGCTCATTCCATTTTGGCTCCGGCTACACTCTTTGTAAAGATTTTTGGTTCCATTTTTGGTGTTGCTGCTGGATTTGTTGTGGGTAAGGAAGGACCTATGGTACACACTGGTGCGTGCATTGCCAATTTACTTGGACAAGGAGGCTCCCGCAAATATCACTTAACTTGGAAGTGGCTCAGGTACTTCAAAAATGATAGGGACAGGCGGGATCTGATCACCTGCGGTGCTGCTGCTGGAGTAGCAGCTGCCTTCCGTGCCCCAGTTGGTGGAGTTCTCTTCGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTTTGGAGAACCTTCTTTACCACTGCCGTAGTGGCAGTTGTGTTGAGAGGTTTCATCGTGTTTTGCCGGGGTGGAAAATGTGGTCTTTTTGGGGAAGGAGGTCTTATTATGTTTGATGTCAATTCAGAACAAGTTTCTTACAGCACCCCGGATTTATTGGCAGTGATATTCCTTGGCGTTCTTGGCGGTGTCTTTGGAAGTCTTTACAATTATTTCGTCGACAAGGTTCTCCGCACTTATAGCATCATCAACGAGAAAGGTCCTTCCATGAAAATTCTACTTGTCGTTACCATTTCTCTAATGACTTCTTGTTGTTCTTACGGTCTTCCATGGTTTTCCATGTGCATTCCTTGCCCTGCTCACTTGGAGGATCAGTGTCCGACTGTAGGTCGCACCGGTAACTACAAGTCCTTTCAATGTCCTCCTAACCATTACAATGACCTTGCTTCCCTTTTACTCAACACCAATGACGATGCAATTCGCAACCTGTTGAGCTCTGGTTCTGTTAAGGAGTTTCACTTCTCTACCCTTGTAGTTTTCTTTGCTGCAATCTACTTTCTCGGCATTATCACTTATGGAATTGCTATTCCCTCTGGCCTATTCATTCCTGTAATACTTGCCGGAGCATCTTACGGCCGCCTTGTGGGGACACTTGTTGGCTCTCTATCGAATCTTGATGTGGGTCTCTTTGCTCTCCTCGGAGCTGCTTCTTTTCTCGGCGGGACCATGAGAATGACTGTTTCTCTCTGTGTCATCCTTCTCGAACTTACCAATGATCTATTGATGCTACCATTGGTTATGCTTGTTCTTCTGATTTCAAAAACTGTAGCAGACTGTTTCAACAAAGGTGTCTATGATCAAATTGTCAAAATGAAGGGGCTGCCATACTTGGAAGCCCATGCAGAGCCATATATGAGACACTTGATAGCAAGTGATGTTGTGTCTGGCCCGCTGATTACATTCTCCGGAGTAGAAAAAGTCGGAACCATAATCTATGCTTTGAAGATGACAAACCATAATGGATTCCCCGTTATTGACGAGCCTCCATTCACGGAAGCTCCAGAACTGTGCGGGCTTGTTCTTAAGTCTCATCTTCTTGTTTTGCTCAAAGGGAAGAAATTCACAAAGCAGAAAGTGAGTACTGGATCAGCAATCATGAGGACTTTCAAAGCTCACGATTTTGCTAAAGCAGGATCGGGTAAGGGGGTGAAGCTGGAGGACTTGGATATCAAAGATGACGAGATGGAGATGTACGTAGATCTTCATCCTATTACAAATACATCGCCCTATACCGTAGTGGAAACAGTGTCTCTTGCTAAAGCAGCTATTCTCTTCCGCGAGCTTGGCCTGCGCCACTTGATGGTCGTCCCGAAGACACCAGGGGCCTTTACTGGATGCAGTGGCTCCGTAACTAGAGTTACTGCACTCTTTTGGGGACCTAAGAAGTCAATTGAACCAAAAGAGACTAATTTCTCGTCTAGGGAGTTCACTCTCACAGCGTTAGAGGAGGACTCGGTTTCCAAGTTGAAACCTAGTAAGTTATCGCTTTCAGTCGTCTCTTCAATCTCAGAAGTTTCAGCCAGTGCCTGGGATGCATGCACCATGGATGCTACAGGCCCTGAAAAATTTAACCCATTTCTCACTCATGGTTTTCTCTCTAGTCTGGAGGAGACAGGCTGTGCAGTGAAGGAAACTGGATGGAGCCCACAACACATTGTTGCAAAGGATGAATTTGAAAACATAGTAGCTGTTGTCCCTCTATATCTTAAAAGTCATTCATATGGGGAATTTGTTTTTGATCATTCTTGGGCCGATGCATACTACAGTTTTGGTGCGAGATATTACCCAAAATTGCAATGTTGTGTGCCTTTTACTCCAGTAACAGGCCCGAGGATTTTAATTCGTAATACTTCTTTCAAGGATCAAGTTTTTGACATTATTGTTTCTGCTATGAGAGAAATGGTAGACAAGTCTCAGCTTTCATCCCTCCATATTACCTTCCCATCTGAAAGTGAGTGGTCCAAACTTAGTGAAAAGGGATTTCTTCAAAGAATTGGTATGCAGTATCACTGGAAAAATCGCAACTATAAAAATTTTGATGAGTTTTTGATGGATATGAAGCAAAGTAAAAGAAAAAATATTCGTCAAGAGCGCAAAAAGATTCTCACACAAAACTTAACAATGAAGCGGCTTCGTGGCCATGAAATAAAGGCTAAGCATTGGGATTCATTCTATAAGTTCTACAGAAACACGACTGATAACAAGTGGGGTACTCCTTATCTTACGAGAGATTTCTTTCATGAAATGGCATCAAAGATGGGAGATAAGGTGATTCTAGTTGTTGCAGAAGAAGGAGATGAACTTATAGCTGGAGCGCTTAATCTCGTAGGAGGCGATACCTTATATGGACGCCTGTGGGGGTGTGACCGACGAGCTCACTATCCAAGTTTGCATTTTGAAGCCTGCTATTATCAGGCAATCGAAGCAGCTATTGAACTTAATATTGAGACGGTCGAGGCAGGAGCTCAAGGAGAGCACAAAATTCAGCGAGGCTATCTTCCAGTGATGACGTATAGCTCTCATTACCTTACAGACAAAGGTTTTGGGAACGCCATACAGGATTTTCTAGTGCGGGAGACAACGCAGATAAAACTTGTTATGAAGCTGCTACATGATTCTGGTCCTTTCAAAGATGATTTGTAG 3573 44.11 MTDRCAMDRPIENDIQIEGFARNGSGVSEDKDCVMLKMKEPLLSKGNRVNTTSQLAIVGANVCPIESLDYEIAENDLFKQDWRSRTKTEIFQYVILKWTLALLIGVGTGLVGFFNNLAVENIAGFKLLLSNNLMLQNKFFQAFVALASCNMVLAIAASALCAYVAPAAAGSGIPEVKAYLNGVDAHSILAPATLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSRKYHLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIVFCRGGKCGLFGEGGLIMFDVNSEQVSYSTPDLLAVIFLGVLGGVFGSLYNYFVDKVLRTYSIINEKGPSMKILLVVTISLMTSCCSYGLPWFSMCIPCPAHLEDQCPTVGRTGNYKSFQCPPNHYNDLASLLLNTNDDAIRNLLSSGSVKEFHFSTLVVFFAAIYFLGIITYGIAIPSGLFIPVILAGASYGRLVGTLVGSLSNLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLMLPLVMLVLLISKTVADCFNKGVYDQIVKMKGLPYLEAHAEPYMRHLIASDVVSGPLITFSGVEKVGTIIYALKMTNHNGFPVIDEPPFTEAPELCGLVLKSHLLVLLKGKKFTKQKVSTGSAIMRTFKAHDFAKAGSGKGVKLEDLDIKDDEMEMYVDLHPITNTSPYTVVETVSLAKAAILFRELGLRHLMVVPKTPGAFTGCSGSVTRVTALFWGPKKSIEPKETNFSSREFTLTALEEDSVSKLKPSKLSLSVVSSISEVSASAWDACTMDATGPEKFNPFLTHGFLSSLEETGCAVKETGWSPQHIVAKDEFENIVAVVPLYLKSHSYGEFVFDHSWADAYYSFGARYYPKLQCCVPFTPVTGPRILIRNTSFKDQVFDIIVSAMREMVDKSQLSSLHITFPSESEWSKLSEKGFLQRIGMQYHWKNRNYKNFDEFLMDMKQSKRKNIRQERKKILTQNLTMKRLRGHEIKAKHWDSFYKFYRNTTDNKWGTPYLTRDFFHEMASKMGDKVILVVAEEGDELIAGALNLVGGDTLYGRLWGCDRRAHYPSLHFEACYYQAIEAAIELNIETVEAGAQGEHKIQRGYLPVMTYSSHYLTDKGFGNAIQDFLVRETTQIKLVMKLLHDSGPFKDDL 1190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43656855 43669836 - BLOR10923 Blo02g01193 57423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01193 1190 SUPERFAMILY Clc chloride channel 75 590 IPR014743 -
Blo02g01193 1190 SUPERFAMILY CBS-domain pair 591 752 IPR046342 -
Blo02g01193 1190 Coils Coil 1187 1190 - -
Blo02g01193 1190 CDD CBS_pair_voltage-gated_CLC_euk_bac 599 748 - -
Blo02g01193 1190 Gene3D - 985 1141 - -
Blo02g01193 1190 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 988 1162 IPR016181 -
Blo02g01193 1190 PRINTS Chloride channel signature 261 280 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo02g01193 1190 PRINTS Chloride channel signature 574 588 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo02g01193 1190 PRINTS Chloride channel signature 166 183 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo02g01193 1190 PRINTS Chloride channel signature 518 534 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo02g01193 1190 PRINTS Chloride channel signature 536 555 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo02g01193 1190 PRINTS Chloride channel signature 486 506 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo02g01193 1190 PRINTS Chloride channel signature 197 216 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo02g01193 1190 CDD ClC_6_like 66 587 - -
Blo02g01193 1190 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 36 752 - -
Blo02g01193 1190 PRINTS Plant CLC chloride channel signature 296 306 IPR002251 GO:0005247|GO:0006821|GO:0016020
Blo02g01193 1190 PRINTS Plant CLC chloride channel signature 282 290 IPR002251 GO:0005247|GO:0006821|GO:0016020
Blo02g01193 1190 PRINTS Plant CLC chloride channel signature 438 454 IPR002251 GO:0005247|GO:0006821|GO:0016020
Blo02g01193 1190 PRINTS Plant CLC chloride channel signature 314 321 IPR002251 GO:0005247|GO:0006821|GO:0016020
Blo02g01193 1190 PRINTS Plant CLC chloride channel signature 71 79 IPR002251 GO:0005247|GO:0006821|GO:0016020
Blo02g01193 1190 Gene3D Clc chloride channel 89 588 - -
Blo02g01193 1190 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 36 752 - -
Blo02g01193 1190 Pfam Voltage gated chloride channel 154 568 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo02g01193 1190 Pfam Peptidogalycan biosysnthesis/recognition 811 1187 IPR007434 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00614 Blo-Chr1:6780429 Blo02g01193 Blo-Chr2:43656855 0 transposed
Blo11g00622 Blo-Chr11:6347279 Blo02g01193 Blo-Chr2:43656855 0 transposed
Blo12g00322 Blo-Chr12:18725555 Blo02g01193 Blo-Chr2:43656855 0 transposed
Blo16g00894 Blo-Chr16:36620751 Blo02g01193 Blo-Chr2:43656855 0 transposed
Blo02g01193 Blo-Chr2:43656855 Blo03g00284 Blo-Chr3:5732060 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01193 K05016 - jre:108988922 1206.43