Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g01234 ATGGCTGCTCTGATAATTCTCATACTTCTCTTCCTTAAACCCACCAAATTTTTTGACTTTATTCCCTTCTTTTCCGCGATGGTAACACCTCTGCCGATTTCCCTCTCCTCAATTTTACTTCTCTCTCTAGTTTCCCATGCAACTGATTCCACAGACTTTCTCAATATGAACTGTCCACATGATTCGCTGTACACCAGAGGAAGTGCTTTCGAAAAGAATCTGAAGCTTGTTCTTGATTCGCTGTCTGCAAACACTCCAGCCTCAGGCTTCAACAACACCGCGATTGAAACAGGGAAAGACAGAGTGTACGGACAAGCACTTTGCAGAGGAGATGTCAACTCAACAATCTGCAAAAACTGCATTCAAAAAGCTGGCGAAGACATTCTTGAGAAGTGTACAAGTAAAGACGCAATGATTTGGTATGAAGATTGCCAAATTCAGTACAATCTCGTCAATTTTTTTTCTCAAATGGTTTACACAGGAAAATACTCATCACAGAACAATTTAAAGAAAAATGTATCGGACCCATCTGGGTTTGGCAATCGTTTGGACTATTTGATGACTAATATTTCCAAGGAAGCGGTTCGTAATTCTTCGAAAAACTTGTTTTCAACTGGGGAGGTCAAGTTTTCGAGGAAGATGACGATTTATGGGCTTGTACAGTGTACGAGGGATATATCGCAGAGCTCATGCGAGAACTGTTTGAACTCTGCAAAGGCGGATTTGCTTGGCTGCTGCTCTGGTCATGAGGGCGGGGCTGTTCTTAGCAGGACTTGTAATGTGAGGTTTGAGGTCTTCCAATTCTACAATGCTTCCACCAATTTGATCATTTTCCCGTCCTCCTCTGGTACGACTTTTCCTCGTGATAAAATACTTAAACCATTCTATGAAGGAATGTCGAATCGACCACAAATATTAGTATGTATCAATTCTAAAAGTTCTTTGCTTATTGTGGCAGGATACTTTGATGTGTTTGCAGAGGAGGAAGCTAACGGAAAATCTATGCTGCAAAAGTTGGGGGCTCTGCAGGGAGTGACGATCACAGAAGAGGGCGAGTTGGTGGATTCTGAAGAATTGATCTTCATGGATATAAACGTTGTAAAGGCTGCTACCGACAACTTTTCTGAATCGAACAAGCTTGGACAAGGCGGGTTTGGGTCAGTGTACAAGGGTGTACTAGCAGATGGGAAGGAGATAGCAGTGAAGAGGCTGTCAAGGAAGTCATGGCAAGGGCTGGTGGAATTCAAGAATGAGATTATACTCATCGCTCGACTTCAACACAAAAACCTCGTCAAACTCATCGGTTGCGCGATGTCCGGGGAGGAGAAGCTGCTTATCTATGAATTCATGCCTAACAACAGCTTGGATACCTTCATTTTTGATTCGAAAAGGCGATTGACATTAGAATGGAAGAAGTGCTTTGAAATAATTATCGGAATCGCACGGGGGCTTCTCTATCTTCACCAAGACTCGAGGCTGACGGTCATTCACAGGGATTTGAAGACGAGCAATGTGTTGTTGGACGGTGAAATGGAGGCTAAAATCTCCGATTTCGGACTGGCAAGGATCTTTTGCGGAAATCAGAACACGGCTAATACCAAACGAGTCGTGGGTTCGTTAGGATATATGGCCCCGGAATATGCGATGGAGGGATTGTTCTCTGTGAAGTCTGATGTGTACAGCTTTGGGGTAGTCCTGCTTGAAATCGTTAGTGGAAGAAGAAACAATGGCTTCCATCAAAATGAGCACGGCCAATCACTTCCGGCTCATGAGGAAGACTTAAAGAGTTTCCGTCAATGGGGAAGCAAAACGCCTGGACACCCTGAGAACTTTGAGACACCGGGAGTTGAAGTTACAACCGGTCCTCTTGGGCAGGGCGTTGCCAATGCAGTTGGTTTAGCACTTGCAGAGAAGCACTTGGCTGCTAGATTCAACAAACCCGATAATGAGATTATAGACCATTACACATATGTGATCCTGGGAGATGGTTGTCAAATGGAGGGAATAGCTAATGAAGCTTGTTCCCTTGCTGCTCACTGGGGGCTTGGAAAGCTGATTGCTTTCTACGATGACAACCACATCTCCATTGATGGTGACACTGACATTGCATTCACGGAGAACGTCGATAAGCGCTTTGAGGGCCTTGGGTGGCACGTTATTTGGGTGAAGAACGGTAACACTGGGTATGATGAAATCCGTGCCGCTATCAAAGAAGCAAAAGCTGTAAAAGACAAGCCCACTATGATCAAGGTGACAACAACCATAGGGTATGGATCTCCAAATAAGGCAAACTCCTACAGTGTGCACGGTAGTGCTCTTGGTGCTAAGGAAGTTGATGCTACAAGGCAGAACTTGGGATGGCCATTTGAGCCCTTCCATGTACCCGATGATGTCAAAAAGCACTGGAGCCGTCATGTTGCTGGTGGTGCTGCCTTTGAAGCCGAGTGGAATGCCAAGTTTTCTGAGTACGAGAAGAAGTACCCGGAGGATGCGGCAGAATTCAAGTCTATCAGCAGTGGTGAATTACCTTCTGGCTGGGAAAAAGCTCTACCTACTTACACCCCGGAGAGCCCTGGTGATGCTACCCGAAATCTATCTCAACAGTGTCTCAATGCTCTTGCAAAAGTTATTCCCGGTTTTCTCGGTGGCAGTGCTGATCTTGCGTCTTCCAACATGACCTTGCTCAAAATGTTTGGAGACTTTCAAAAGGACACTCCCGAAGAACGCAATCTTAGATTTGGTGTTAGGGAGCACGGAATGGGAGCCATATGCAATGGAATTGCACTTCACAGCCCTGGACTGATTCCTTACTGTGCAACATTCTTCGTTTTTACTGACTACATGAGAGCTGCCATTAGGATTTCTGCTCTCAGTGAATCTCGAGTTATCTACGTCATGACCCACGATTCTATTGGTCTCGGAGAAGATGGGCCCACCCATCAGCCTATCGAACACCTAGCTAGTTTCCGGGCGATGCCTAATGTATTGATGCTGAGGCCCGCTGATGGTAACGAGACTGCCGGAGCGTACAAAGTTGCAGTTCTCAACAAGAAACGGCCCTCTATCCTTGCCCTTTCACGTCAAAAATTGCCCCACCTTCCTGGAACATCCATTGAAGGAGTTGAGAAAGGAGGATACATCATCTCAGACAATTCTTCCGGCAACAAGCCGGATGTGATATTGATCGGAACTGGCTCGGAACTAGAGATTGCTGCTAAAGCTGGTGACGGACTGAGAAAGGAAGGAAAGGCTGTCAGAGTTGTTTCCTTTGTCTCATGGGAGCTTTTCGATGAGCAATCGGATGCTTACAAGGAAAGTGTTTTGCCAGCTTCTGTAACGGCTAGAATTAGCATTGAGGCTGGATCTACATTCGGCTGGGAAAAGATTGTCGGAAGCAAAGGAAAGGCGATCGGAATTGACCGATTTGGTGCGAGTGCTCCAGCTGGAACCATATACAAAGAGTTCGGGATTACTGCGGAAGCCATTGTAGCAGCTGCTAAACAACTTTGCTAG 3513 45.77 MAALIILILLFLKPTKFFDFIPFFSAMVTPLPISLSSILLLSLVSHATDSTDFLNMNCPHDSLYTRGSAFEKNLKLVLDSLSANTPASGFNNTAIETGKDRVYGQALCRGDVNSTICKNCIQKAGEDILEKCTSKDAMIWYEDCQIQYNLVNFFSQMVYTGKYSSQNNLKKNVSDPSGFGNRLDYLMTNISKEAVRNSSKNLFSTGEVKFSRKMTIYGLVQCTRDISQSSCENCLNSAKADLLGCCSGHEGGAVLSRTCNVRFEVFQFYNASTNLIIFPSSSGTTFPRDKILKPFYEGMSNRPQILVCINSKSSLLIVAGYFDVFAEEEANGKSMLQKLGALQGVTITEEGELVDSEELIFMDINVVKAATDNFSESNKLGQGGFGSVYKGVLADGKEIAVKRLSRKSWQGLVEFKNEIILIARLQHKNLVKLIGCAMSGEEKLLIYEFMPNNSLDTFIFDSKRRLTLEWKKCFEIIIGIARGLLYLHQDSRLTVIHRDLKTSNVLLDGEMEAKISDFGLARIFCGNQNTANTKRVVGSLGYMAPEYAMEGLFSVKSDVYSFGVVLLEIVSGRRNNGFHQNEHGQSLPAHEEDLKSFRQWGSKTPGHPENFETPGVEVTTGPLGQGVANAVGLALAEKHLAARFNKPDNEIIDHYTYVILGDGCQMEGIANEACSLAAHWGLGKLIAFYDDNHISIDGDTDIAFTENVDKRFEGLGWHVIWVKNGNTGYDEIRAAIKEAKAVKDKPTMIKVTTTIGYGSPNKANSYSVHGSALGAKEVDATRQNLGWPFEPFHVPDDVKKHWSRHVAGGAAFEAEWNAKFSEYEKKYPEDAAEFKSISSGELPSGWEKALPTYTPESPGDATRNLSQQCLNALAKVIPGFLGGSADLASSNMTLLKMFGDFQKDTPEERNLRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALSESRVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNVLMLRPADGNETAGAYKVAVLNKKRPSILALSRQKLPHLPGTSIEGVEKGGYIISDNSSGNKPDVILIGTGSELEIAAKAGDGLRKEGKAVRVVSFVSWELFDEQSDAYKESVLPASVTARISIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGTIYKEFGITAEAIVAAAKQLC 1170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 44484592 44503260 + BLOR10964 Blo02g01234 57464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g01234 1170 Gene3D Phosphorylase Kinase; domain 1 349 449 - -
Blo02g01234 1170 ProSiteProfiles Gnk2-homologous domain profile. 52 153 IPR002902 -
Blo02g01234 1170 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 843 1033 IPR029061 -
Blo02g01234 1170 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 589 836 IPR029061 -
Blo02g01234 1170 Gene3D - 836 1042 - -
Blo02g01234 1170 SMART Transket_pyr_3 860 1032 IPR005475 -
Blo02g01234 1170 CDD TPP_TK 591 782 IPR005474 -
Blo02g01234 1170 ProSiteProfiles Gnk2-homologous domain profile. 161 268 IPR002902 -
Blo02g01234 1170 Pfam Transketolase, pyrimidine binding domain 861 1032 IPR005475 -
Blo02g01234 1170 Pfam Transketolase, C-terminal domain 1056 1162 IPR033248 -
Blo02g01234 1170 PANTHER TRANSKETOLASE-1, CHLOROPLASTIC 590 1168 - -
Blo02g01234 1170 Gene3D - 1043 1170 IPR009014 GO:0003824
Blo02g01234 1170 SMART serkin_6 374 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo02g01234 1170 Pfam Transketolase, thiamine diphosphate binding domain 592 843 IPR005474 -
Blo02g01234 1170 PANTHER TRANSKETOLASE 590 1168 IPR033247 -
Blo02g01234 1170 ProSiteProfiles Protein kinase domain profile. 374 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo02g01234 1170 TIGRFAM tktlase_bact: transketolase 591 1169 IPR005478 GO:0004802
Blo02g01234 1170 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
Blo02g01234 1170 Gene3D Transferase(Phosphotransferase) domain 1 464 559 - -
Blo02g01234 1170 Pfam Salt stress response/antifungal 170 264 IPR002902 -
Blo02g01234 1170 Pfam Salt stress response/antifungal 62 149 IPR002902 -
Blo02g01234 1170 ProSitePatterns Transketolase signature 2. 974 990 IPR020826 -
Blo02g01234 1170 SUPERFAMILY TK C-terminal domain-like 1037 1169 IPR009014 GO:0003824
Blo02g01234 1170 Pfam Protein tyrosine and serine/threonine kinase 377 573 IPR001245 GO:0004672|GO:0006468
Blo02g01234 1170 Gene3D - 50 153 IPR038408 -
Blo02g01234 1170 Gene3D - 161 268 IPR038408 -
Blo02g01234 1170 ProSitePatterns Protein kinases ATP-binding region signature. 380 402 IPR017441 GO:0005524
Blo02g01234 1170 CDD TPP_PYR_DXS_TK_like 864 1027 - -
Blo02g01234 1170 Gene3D - 560 835 - -
Blo02g01234 1170 SUPERFAMILY Protein kinase-like (PK-like) 360 579 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g01234 K00615 E2.2.1.1, tktA, tktB; transketolase [EC:2.2.1.1] - nnu:104602251 1102.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01234 Blo-Chr2:44484592 Blo12g00059 Blo-Chr12:4206467 0 dispersed
Blo10g00028 Blo-Chr10:248513 Blo02g01234 Blo-Chr2:44484592 1.28E-08 dispersed
Blo02g01234 Blo-Chr2:44484592 Blo14g00334 Blo-Chr14:3427504 4.04E-149 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g975 Blo02g01234 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002036 2 2 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 2 2 3 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84171 PF00456 Transketolase_N 3.10E-110 CL0254 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g01234 Blo_Chr02 FPKM 14.768269 15.101472 20.721514 20.934877 33.293362 37.692783 37.431271 6.832852 6.324086 6.070899