Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00048 ATGTTTTCACTGCAGAATTTATCTTCCATCTTGATCTCTTCGTCTTCCTCTGCTTTCTTTGCGCACACCAATTTCAATTCAAGAACTTCGAATGTATCCCTTCCAGTGAACAACGTTGGAGGCTCCAAGTGCGTTGCTCCTCCCCAGGAAGTTAAGACTGCCCACAAAACTAAGGTAGCTCGCAATGCAAACATGGGGAAACTGCAAGCAGGATATCTTTTTCCTGAAATTGCGAGGAGAAGGGCTGCACACTTATTGAAATATCCTGATGCTCAAGTGATAAGCCTTGGTATTGGTGATACGACTGAGCCCATTCCTGATGTCATAACTTCTGCAATGGCAAAGAGATCAAATGCCTTGTCAACGCAAGAGGGTTATAGTGGATATGGCTCAGAACAAGGTGAAAAGCCATTGAGAGCTGCAATTGCTACTACATTTTATGGTGATCTTGGAATTGAGGAAGATGATATTTTTGTTTCAGATGGTGCAAAATGTGACATCTCCCGACTCCAGGTGGTTTTTGGGTCTGATGTAGTAATGGCAGTTCAAGACCCATCATATCCAATCATTTGTCCTATTGGCATTCCATTTTCCTCTTTTGAAGAATGTGGATGGTTAAATTCAGTGGTAAATTTTGCTAAGCAGTTTATTACTTTACGAATATCATGTATTTTGATGAAGCATTATGTAGTACTAATCTATAACAATAAATTGGCTTATGTTGATTCCAGTGTAATTATGGGGCAAACTGGCCAGTTTCAGAAGGATCTTGAAAAGTATGGGAAAATTGAGTATATGAGATGTACTCCAGAGAATGGTTTCTTTCCTGATTTATCTGCAATATCACGACCAGATATTATCTTTTTCTGTTCGCCAAACAATCCTACCGGTTCTGCTGCAACAAGGGAACAACTGACTCAGTTGGTGCAATTTGCAAAGGACAATGGATCAATTATAGTCTATGATTCTGCATATGCTATGTACATTTCTGAGGATAATCCAAGATCCATCTTCGAAATTCCTGGGGCCAGGGAGGTTGCAATTGAGACATCATCATTTAGTAAGTATGCAGGTTTTACTGGAGTTCGTCTTGGTTGGACAGTTGTTCCAAAGGAGCTACTATTCTCTGATGGATTTCCTGTTGCCAAGGATTTCAGCCGCATTGTTTGTACTTGCTTCAATGGTGCATCTAACATTGCGCAGGCTGGTGGTCTTGCCTGTCTTTCACCCGAAGGCATGAAGGCCATGCAGAAGGCAATTGGATTTTACAAAGAGAACGCGCTTATCATAGTCGACACTTTTAGTTCTCGCGGTTTTAACGTGTATGGGGGGAAGAACGCACCATATGTGTGGATTCATTTTCCAGGCCAAAGTTCATGGGACGTGTTCGGTGAGATATTGGAGAAAACTCACGTTGTCACGACGCCCGGAAGTGGTTTCGGACCGGGTGGTGAAGGTTTTATAAGGGTTACCGCATTTGGTCACAGGGAGAATATATTGGAAGCTTGTGAAAGGTTCAAGCAGCTCTACTAG 1533 42.07 MFSLQNLSSILISSSSSAFFAHTNFNSRTSNVSLPVNNVGGSKCVAPPQEVKTAHKTKVARNANMGKLQAGYLFPEIARRRAAHLLKYPDAQVISLGIGDTTEPIPDVITSAMAKRSNALSTQEGYSGYGSEQGEKPLRAAIATTFYGDLGIEEDDIFVSDGAKCDISRLQVVFGSDVVMAVQDPSYPIICPIGIPFSSFEECGWLNSVVNFAKQFITLRISCILMKHYVVLIYNNKLAYVDSSVIMGQTGQFQKDLEKYGKIEYMRCTPENGFFPDLSAISRPDIIFFCSPNNPTGSAATREQLTQLVQFAKDNGSIIVYDSAYAMYISEDNPRSIFEIPGAREVAIETSSFSKYAGFTGVRLGWTVVPKELLFSDGFPVAKDFSRIVCTCFNGASNIAQAGGLACLSPEGMKAMQKAIGFYKENALIIVDTFSSRGFNVYGGKNAPYVWIHFPGQSSWDVFGEILEKTHVVTTPGSGFGPGGEGFIRVTAFGHRENILEACERFKQLY 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1812038 1820179 - BLOR11229 Blo03g00048 57512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00048 510 Pfam Aminotransferase class I and II 261 506 IPR004839 GO:0009058|GO:0030170
Blo03g00048 510 Gene3D Aspartate Aminotransferase, domain 1 406 510 IPR015422 GO:0003824
Blo03g00048 510 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC 239 510 - -
Blo03g00048 510 PANTHER AMINOTRANSFERASE 239 510 IPR019942 GO:0008483
Blo03g00048 510 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC 10 188 - -
Blo03g00048 510 CDD AAT_like 94 508 - -
Blo03g00048 510 PANTHER AMINOTRANSFERASE 10 188 IPR019942 GO:0008483
Blo03g00048 510 Gene3D - 103 405 IPR015421 GO:0003824
Blo03g00048 510 SUPERFAMILY PLP-dependent transferases 71 504 IPR015424 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00048 K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] - cpap:110819036 737.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00048 Blo-Chr3:1812038 Blo17g00208 Blo-Chr17:2096928 8.27E-175 dispersed
Blo03g00048 Blo-Chr3:1812038 Blo12g00675 Blo-Chr12:25039341 9.33E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g811 . Blo03g00048 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed07g1158 . Cmo16g00312 . . . . . . Bhi11g01088 Tan01g0587 Cmetu07g0545 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006830 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00048 Blo_Chr03 FPKM 11.111111 12.410689 11.391674 11.594913 27.748112 28.562693 29.129669 4.074493 4.394629 3.809176