Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00053 ATGGCTAAATTTGCTATTGTCCTTGTTTTTGCTTTCATAGCTCAACTCTCTCTTGCCCAAAACTTACCTCAAGACTACATCAATGCCCACAACACAGCTCGATCACAAGTAAGAGTTGGGGCCATCACTTGGGACAACAACTTAGCAACCTGGGCTCAAAACTACATCAACGGGCTCAGCTCAAGTTGCCAGATGGTCCACTCAGGTGGGCCCTACGGCGAGAACCTTGCGTGGAGCTCTGGTGACTTGTCTGGCACCAGTGCAGTTGGCCTCTGGGTGGCCGAGAGACCATTTTACGACTACAACTCCAACTCATGCATTGGTGGAGAGTGCCGACACTACACTCAAGTCGTGTGGAGAAACTCTATTCGGGTCGGTTGTGCTAAGGGAGCGACTTCGGGCCAGCTGTTCACTGCTGTCACCATCGACGGGAACGATAGAATGTATCCAATTGTTGTAGCAGTGGTTAAAGCAGAAAATAGGGGGCTAGTGCCAGCTGTTAGAGAGATGGGGAGGCGAGTCCAGTGCCGGGGCCGGCAGAGGCGAGAGAGGGAGAGGCAAAGCCAGAGGCAGAGACAGAGGCGGCAAAGGAAGGTCACATTTATGGGTTTTAGAGTCCCCGAGACAGCTCCCGAGACAATTTGTTCCATAGTCCCGGAGACAGTCCCCGAGAAAGTATCTGAGAAAGTTCCCGACAGAGTTCCTGAGACACAGGAGTATGATGCGCAAGGTCCACAAACACAAACATACACAAATGTGGACCTTAACCTTCTGTGA 777 51.61 MAKFAIVLVFAFIAQLSLAQNLPQDYINAHNTARSQVRVGAITWDNNLATWAQNYINGLSSSCQMVHSGGPYGENLAWSSGDLSGTSAVGLWVAERPFYDYNSNSCIGGECRHYTQVVWRNSIRVGCAKGATSGQLFTAVTIDGNDRMYPIVVAVVKAENRGLVPAVREMGRRVQCRGRQRRERERQSQRQRQRRQRKVTFMGFRVPETAPETICSIVPETVPEKVSEKVPDRVPETQEYDAQGPQTQTYTNVDLNLL 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2021369 2028670 + BLOR11234 Blo03g00053 57517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00053 258 PRINTS Allergen V5/Tpx-1 family signature 111 127 IPR001283 -
Blo03g00053 258 PRINTS Allergen V5/Tpx-1 family signature 88 101 IPR001283 -
Blo03g00053 258 PRINTS Allergen V5/Tpx-1 family signature 42 60 IPR001283 -
Blo03g00053 258 PANTHER PATHOGENESIS-RELATED PROTEIN 1 7 133 - -
Blo03g00053 258 MobiDBLite consensus disorder prediction 240 258 - -
Blo03g00053 258 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 7 133 IPR001283 -
Blo03g00053 258 MobiDBLite consensus disorder prediction 174 190 - -
Blo03g00053 258 SUPERFAMILY PR-1-like 12 134 IPR035940 -
Blo03g00053 258 MobiDBLite consensus disorder prediction 174 200 - -
Blo03g00053 258 MobiDBLite consensus disorder prediction 225 258 - -
Blo03g00053 258 SMART SCP_3 21 166 IPR014044 -
Blo03g00053 258 Pfam Cysteine-rich secretory protein family 28 132 IPR014044 -
Blo03g00053 258 Gene3D CAP 16 154 IPR035940 -
Blo03g00053 258 ProSitePatterns CRISP family signature 1. 112 122 IPR018244 GO:0005576
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00053 K13449 PR1; pathogenesis-related protein 1 - tcc:18607284 193.356
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00053 Blo-Chr3:2021369 Blo14g00638 Blo-Chr14:12672604 4.19E-28 dispersed
Blo03g00050 Blo-Chr3:1854990 Blo03g00053 Blo-Chr3:2021369 3.43E-38 proximal
Blo03g00053 Blo-Chr3:2021369 Blo03g00054 Blo-Chr3:2086575 9.07E-83 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g792 . Blo03g00053 Bda06g01149 . Bpe07g00298 . Bma05g00636 Bma12g00310 Cmo19g00543 . . . . . . Cpe04g00336 Cpe15g00425 . . . . . . . Cla02g00705 Cam02g0738 Cec02g0752 Cco02g0778 Clacu02g0748 Cmu02g0742 Cre02g1056 . . . . Lsi03g00618 Csa07g00664 . Cme01g00139 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00150 Cme07g02221
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00053 Blo_Chr03 FPKM 0.0 0.797405 0.0 0.0 1.893811 2.236648 1.560216 0.0 0.0 0.0