Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00057 ATGTCTCTGATTCTCTTAGCGCCGTTCCCTCGTGTAGCGTTTCGCCTCCACCGCTTTTTCAAAACCCACCTTCCGAAAACTTATTCCATTACTCAAACGACTCCTTTCTCTGTCTCTGCATCCGTTAGTCCTCAACCCACTTACCCAATTCCTCCCTATTCTTCTTCTTCTTTGTCTTCTTCTTCTGAAACTCTAATTCCCAGCCCGAATTTAGCTGGCCATCTTCAGGACTCTCTTCAGTGGGTTAGTCGTACTGGGTTCTGCGGAGAATTGTCTATTGACGATGTTGGTGAACGAGTTCGACTCTGTGGATGGGTGGCTCTTCATAGGGTCCATGGTGGTCTCACCTTTCTCAATCTTAGAGACCATACTGGTATTGTTCAGGTGACTACGCTTCCTAATGAGTTTCCAGACGCCCATTCCACCATTAATGACTTGAGGCTTGAGTATGTGGTTGCTGTGGAAGGGATTGTCCGGTCTCGGCCGAGCGAATCAATTAATAAAAAAATGAAAACTGGCTTGATAGAGGTTGCTGCCGAGAATGTTCAAGTTTTGAATGCTGTGAGATTAAAGTTGCCATTCTTAGTTACAACAGGGGATGATACAAATGACTCTGCTAAAGAAGAAATACGTTTGAGATACCGTTACCTTGATCTTCGGAGGCAGCAAATGAATGTTAACTTAATGTTGCGGCATAGAGTGGTGAAGCTCATTCGAAGATTTTTGGAGGATGTTCATGATTTTGTGGAGATTGAGACTCCAATACTTTCTAGATCTACTCCGGAAGGTGCCCGAGATTATTTGGTACCATCTAGAGTCCAGCCAGGAACTTTCTATGCGTTACCGCAAAGTCCGCAGCTGTTTAAGCAAATGCTTATGGTTTCTGGTTTTGACAAATATTATCAAATAGCAAGATGTTTTCGAGACGAGGACTTAAGAGCAGATAGACAACCTGAATTTACACAGCTTGATATTGAATTAGCATTCCCAACATTGGAGAACATGCTGAATCTTAATGAAGAATTGATTAGAAAGGTTTTTCAGGAAATCAAAGGAGTTCAGCTGCCAAATCCTTTCCCAAGGCTTACCTATGCCGAAGCCATGAGTCGATACGGTTCAGATAGACCAGATACAAGATTTGACCTCGAGTTGCGAGATGTAGTGTCTGATTTCTTCGTCGACTCCAACTTCCGGGTTTTTGCAGATGCTCTAAAAGGCGGAGGAATTATCAAAGTGCTTTGTGTGCCATCGGGCGCTAAAATTTATTCAAACACGGCTCTTAAAAAAGGGGATATTTACAATGAAGCGATGAAATCCGGAGCAAAAGGGTTGCCCTTCCTGAAAGTCTTAGATGATGGTGAGGTCGAAGGTATTCCAGCACTCGTATCAACCTTGGGTCCTTCAGATAAAGAGATGTTTTTGAGACGATGTTGTGCTGGGCCGGGAGATATTTTCTTATTTGCCGTAGGCTCTCGTGCTGGTGTGAATAGAACCCTCGATCGTCTTAGAATATTTGTTGCCCATCAGCTCGGTTTAGTGGATCAGTCGAAACATTCGATTCTGTGGGTGACCGATTTCCCGATGTTTGAGTGGAATGAGTCGGAGCAGAGGCTTGAGGCCTTGCATCATCCTTTCACTGCTCCGAACCCAGAAGACATGAATGATCTTTCCTCTGCCCGTGCCCTCGCATACGACGTTGTCTACAATGGAGTGGAGATCGGTGGGGGAAGCTTGAGAATTTATAAACGCGATATTCAACAAAAAGTTTTGGAGATTGTGGGCATCTCTCCCAAACAGGCCGAAGCGAAGTTCGGGTACCTTTTGGAGGCATTAGACATGGGTGCTCCTCCTCACGGGGGGATTGCATATGGATTGGATAGATTAGTTATGTTATTGGCTGGAGCCAATTCAATAAGAGACGTCATAGCTTTTCCAAAAACGACCACAGCACAATGTGCTCTTACGAGAGCTCCGTCGGAGGTGGATTCTCTGCAGCTCGAGGAATTGTCGTATTTCAATAAATAG 2025 44.59 MSLILLAPFPRVAFRLHRFFKTHLPKTYSITQTTPFSVSASVSPQPTYPIPPYSSSSLSSSSETLIPSPNLAGHLQDSLQWVSRTGFCGELSIDDVGERVRLCGWVALHRVHGGLTFLNLRDHTGIVQVTTLPNEFPDAHSTINDLRLEYVVAVEGIVRSRPSESINKKMKTGLIEVAAENVQVLNAVRLKLPFLVTTGDDTNDSAKEEIRLRYRYLDLRRQQMNVNLMLRHRVVKLIRRFLEDVHDFVEIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDIELAFPTLENMLNLNEELIRKVFQEIKGVQLPNPFPRLTYAEAMSRYGSDRPDTRFDLELRDVVSDFFVDSNFRVFADALKGGGIIKVLCVPSGAKIYSNTALKKGDIYNEAMKSGAKGLPFLKVLDDGEVEGIPALVSTLGPSDKEMFLRRCCAGPGDIFLFAVGSRAGVNRTLDRLRIFVAHQLGLVDQSKHSILWVTDFPMFEWNESEQRLEALHHPFTAPNPEDMNDLSSARALAYDVVYNGVEIGGGSLRIYKRDIQQKVLEIVGISPKQAEAKFGYLLEALDMGAPPHGGIAYGLDRLVMLLAGANSIRDVIAFPKTTTAQCALTRAPSEVDSLQLEELSYFNK 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2149505 2155092 - BLOR11238 Blo03g00057 57521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00057 674 TIGRFAM aspS_bact: aspartate--tRNA ligase 83 670 IPR004524 GO:0005524|GO:0016874
Blo03g00057 674 SUPERFAMILY GAD domain-like 380 513 IPR004115 GO:0004812|GO:0005524|GO:0005737
Blo03g00057 674 CDD EcAspRS_like_N 84 224 - -
Blo03g00057 674 Gene3D - 76 188 IPR012340 -
Blo03g00057 674 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 63 671 - -
Blo03g00057 674 PANTHER ASPARTATE--TRNA LIGASE, MITOCHONDRIAL 63 671 IPR004524 GO:0005524|GO:0016874
Blo03g00057 674 Pfam tRNA synthetases class II (D, K and N) 208 648 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Blo03g00057 674 Gene3D - 363 513 IPR004115 GO:0004812|GO:0005524|GO:0005737
Blo03g00057 674 Gene3D Bira Bifunctional Protein; Domain 2 202 670 IPR045864 -
Blo03g00057 674 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 228 645 IPR006195 -
Blo03g00057 674 PRINTS Aspartyl-tRNA synthetase signature 281 293 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Blo03g00057 674 PRINTS Aspartyl-tRNA synthetase signature 608 622 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Blo03g00057 674 PRINTS Aspartyl-tRNA synthetase signature 564 580 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Blo03g00057 674 PRINTS Aspartyl-tRNA synthetase signature 298 311 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Blo03g00057 674 SUPERFAMILY Class II aaRS and biotin synthetases 208 647 IPR045864 -
Blo03g00057 674 Hamap Aspartate--tRNA(Asp/Asn) ligase [aspS]. 83 674 IPR004524 GO:0005524|GO:0016874
Blo03g00057 674 SUPERFAMILY Nucleic acid-binding proteins 84 186 IPR012340 -
Blo03g00057 674 Pfam GAD domain 400 499 IPR029351 -
Blo03g00057 674 Pfam OB-fold nucleic acid binding domain 100 184 IPR004365 GO:0003676
Blo03g00057 674 CDD AspRS_core 228 648 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00057 K01876 DARS2, aspS; aspartyl-tRNA synthetase [EC:6.1.1.12] - vvi:100241273 1027.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00057 Blo-Chr3:2149505 Blo14g00327 Blo-Chr14:3373565 3.33E-07 dispersed
Blo03g00057 Blo-Chr3:2149505 Blo01g00679 Blo-Chr1:7852107 5.86E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g777 . Blo03g00057 Bda06g01152 . Bpe07g00295 . . Bma12g00306 . . . . . . . . . . . . . . . . Cla10g00957 Cam10g0980 Cec10g1011 Cco10g0974 Clacu10g1002 Cmu10g1784 Cre10g1158 . . Cone3ag1050 Cone10ag1066 . . . . . . . . . . . . Sed07g1150 Cmo04g00458 Cmo16g00319 . . . . Cpe14g00249 Cpe01g00384 Bhi11g01096 Tan01g0600 Cmetu07g2217 . . Mch10g0404 . . . . . . . . Lsi03g01002 . . Cme07g02215
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009118 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00057 Blo_Chr03 FPKM 15.061856 16.470911 9.542887 10.35233 5.967258 5.719439 7.398455 19.499647 16.741686 19.705137