Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00059 ATGGCGGTTTTGAGCGGTATGGGCGGCTATAATTCCAACATTATAGTCGAAAACCTGTGTTTAATTTCTAAGAATCCAGATTTCCGCATGCCGACGGTTCGCCTGGGGCCTTTCAGAAACTGGAGGGAGTTGAAAGCAAAAATGAGGGGGAATGGAGTGAAGGCAGCGATGGAAGTGGGTTTGGAGTCAGAAAGTGCGAGAAAGTTAGAAGGTTTAGAGAGGGCACTGAGATTCGACGTAGTATCTGAATGTGAATTGAAGGAAAAGGGATTTTTAGGAATGAGAAAGACGAAGATCGTATGCACAATCGGTCCATCGTGTAGCGAAATCGATGATTTGGAGAGATTGGCTTTGAGAGGGATGAATGTCGCGAGGTTTAACATGTGTCACAACACGAGAGAATGGCATCGCGATGCGATTAGGAAGATCAAGAAGTTGAATGAAGAAAAGGGGTTTTGTGTTTCGGTGATGATCGACACAGAAGGTAGTCAAATTCACGTGGTTGATCATGGATCTCCATCTTCCCTCAAAGCCGAGGATGGATCAATCTGGCTTTTTACTGCTCGGAAACACAAGGGCTCTAGTCCATTCACCATTCAAACAAACTACGAAGCTTTTTCCGATGGTATTCATGTGGGTGACGAACTCGTGATTGACGGGGGAATGGCAAGCTTTGCAGTGATTGAAAAGGACGGGAGTGACTTACGTTGCAAGTGCACTGACCCTGGTTTATTCCTCCCTCGAGCTAAATTTAGCTTTTGGAGAGATGGGAGACTTGTTAACAGGAATTGTGAGCTACCTACTCTGTCAACAAAGGATTGGGACGATATCGAATTCGGTGTGGCCGAAGGTGTGGATTTTATTGCCATGTCATTTGTGAACAAGGCAGATTCTATAATGGATCTAAAGAAGTACCTCTCCCCCAAGTCAGCCAAGTCTATAAGAGTATTGGCGAAGATTGAGAGCTTGGAATCTCTTTACAAATTAGAAGAAATTATAGAAGCTTCTGACGGAATCATGGTGGCTCGAGGCGATCTTGGGGTCGAAATCCCCCTTGAACAGATTCCGACTGTACAAGCGGAGATAATTAAGGTTTGCAGGAAATTAAACAAGCCAGTAATTGTTGCTTCCCAACTTCTCGAGTCGATGGTTGCAGATGTTTCCGAAGCTGTCCGGCAGTATGCCGACGCCTTGATGTTGTCTGGCGAGTCAGCCATCGGATCTTACGGAGAAAAGGCTCTCTCCGTTCTGTGTATGGCAAGCAGCAGAATGGAAATGTGGGGTCGTGTCGAAAACAGCCGAAACGCCCTCGATCAACACCAAATCGGAGTGTCACTGCCTGATCGGATTTCTGAGCAGATATGCAGCTGTGCAAGTACAATGGCCAACAACCTAGCCGTGGATGCAATATTCGTGTACACGAAACACGGTCGAATGGCATCGCTTTTGTCGCGTAATCGTCCAAACCCTCCGATATTTGCATTCACAGACAGCAAAAGCACAAAGATGGCACTGAATTTATTTTGGGGCGTTACACCTATTCAGGTCGATGTGTGCGATGATTATTTGGAAGCTAACGTCTCGAAGGACATTGAGATTGTTAAATCAAAAGGGTTGATTAAGCCGGGAGACTCCGTTTTGGTGGTGTTTGATCTTGATCCAGCTCCAGCTGCTCCGACGGCCTTCCAGTCGATCCAGGTTCTTAAATTGCCGATTTCTTCGATATCGGTTTCGCAGCCGAAGCTTCCAGGTAAACTGAGCCGGTTCTACTCGGACTCGAATTCCAGGGGCAAAAGTAAGACTATACTGAGTGTTTTTCAGAGCTCGAGGTTGAGGAGTTCTTACTTTTTCAATCGGTTCAGTGTTAGCTGCGCTTCTCAAGAAAGTGATAGCCAAACTAATGGTGAAGAACCTCCCGAGTCGTTATTCATGAAGGAACTGAAGAGGAGAGGAATGACTCCCACTTCATTGCTTGAGGATACTAATTGGAGTGAAGTTGGACTTGGCAGTGAAACAGCTGATAAGGGCAGAGGTTTCTCTAAAAGAAATGCTGTCTCAACGGAAGTTGACAAAAGCTTATCAAATCAAAGAGAGCGCTCAATGTTACTGAACAGCGAAGGCCTTGAGGGATTGATCCCTCGAGCTAAACTTTTGCTAACTATTGGAGGAACATTTTTCTTGGGATTTTGGCCGCTGATCCTCATTACTGTTGGAGTCTTCTCTGCGCTCTACTTTTATTTTGGTGCAACATTCATCCACGATGCAACAAGAATGCCGGTAGCTCCTCCCCAATACGTCGATCCCTACACCCTTCTCGAGGACGAGAGAATTTCTCAAATAGCAGCTCCTCGTGCTAATTGA 2361 45.83 MAVLSGMGGYNSNIIVENLCLISKNPDFRMPTVRLGPFRNWRELKAKMRGNGVKAAMEVGLESESARKLEGLERALRFDVVSECELKEKGFLGMRKTKIVCTIGPSCSEIDDLERLALRGMNVARFNMCHNTREWHRDAIRKIKKLNEEKGFCVSVMIDTEGSQIHVVDHGSPSSLKAEDGSIWLFTARKHKGSSPFTIQTNYEAFSDGIHVGDELVIDGGMASFAVIEKDGSDLRCKCTDPGLFLPRAKFSFWRDGRLVNRNCELPTLSTKDWDDIEFGVAEGVDFIAMSFVNKADSIMDLKKYLSPKSAKSIRVLAKIESLESLYKLEEIIEASDGIMVARGDLGVEIPLEQIPTVQAEIIKVCRKLNKPVIVASQLLESMVADVSEAVRQYADALMLSGESAIGSYGEKALSVLCMASSRMEMWGRVENSRNALDQHQIGVSLPDRISEQICSCASTMANNLAVDAIFVYTKHGRMASLLSRNRPNPPIFAFTDSKSTKMALNLFWGVTPIQVDVCDDYLEANVSKDIEIVKSKGLIKPGDSVLVVFDLDPAPAAPTAFQSIQVLKLPISSISVSQPKLPGKLSRFYSDSNSRGKSKTILSVFQSSRLRSSYFFNRFSVSCASQESDSQTNGEEPPESLFMKELKRRGMTPTSLLEDTNWSEVGLGSETADKGRGFSKRNAVSTEVDKSLSNQRERSMLLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLILITVGVFSALYFYFGATFIHDATRMPVAPPQYVDPYTLLEDERISQIAAPRAN 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2206831 2213329 + BLOR11240 Blo03g00059 57523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00059 786 ProSitePatterns Pyruvate kinase active site signature. 314 326 IPR018209 GO:0004743|GO:0006096
Blo03g00059 786 PRINTS Pyruvate kinase family signature 152 168 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Blo03g00059 786 PRINTS Pyruvate kinase family signature 343 367 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Blo03g00059 786 PRINTS Pyruvate kinase family signature 368 392 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Blo03g00059 786 PRINTS Pyruvate kinase family signature 316 342 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Blo03g00059 786 PRINTS Pyruvate kinase family signature 285 299 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Blo03g00059 786 Gene3D - 95 424 IPR040442 -
Blo03g00059 786 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 89 426 IPR015813 GO:0003824
Blo03g00059 786 PANTHER PYRUVATE KINASE 39 569 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Blo03g00059 786 SUPERFAMILY PK beta-barrel domain-like 165 252 IPR011037 -
Blo03g00059 786 Pfam Pyruvate kinase, alpha/beta domain 452 549 IPR015795 -
Blo03g00059 786 TIGRFAM pyruv_kin: pyruvate kinase 95 552 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Blo03g00059 786 Pfam Pyruvate kinase, barrel domain 94 420 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Blo03g00059 786 SUPERFAMILY PK C-terminal domain-like 446 552 IPR036918 -
Blo03g00059 786 PANTHER PYRUVATE KINASE 39 569 - -
Blo03g00059 786 Gene3D - 425 550 IPR036918 -
Blo03g00059 786 Gene3D - 163 267 IPR015806 GO:0004743|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00059 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - sspl:121809287 934.48
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00916 Blo03g00059 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00059 Blo-Chr3:2206831 Blo04g00442 Blo-Chr4:3656028 7.35E-60 dispersed
Blo01g00106 Blo-Chr1:1462035 Blo03g00059 Blo-Chr3:2206831 4.12E-115 transposed
Blo03g00829 Blo-Chr3:33909361 Blo03g00059 Blo-Chr3:2206831 1.49E-09 transposed
Blo09g00048 Blo-Chr9:751049 Blo03g00059 Blo-Chr3:2206831 9.00E-86 transposed
Blo02g00916 Blo-Chr2:35353864 Blo03g00059 Blo-Chr3:2206831 5.37E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g659 . Blo03g00059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00775 . . . . . . . Cmo19g00460 . . . . . Cpe15g00346 . . . . . . . . . . . . . . . . . .
Vvi3g772 Blo02g00916 Blo03g00059 . Bda08g00688 Bpe07g00294 . . Bma12g00304 . . . . . . . . . . . . . . . . Cla10g00960 Cam10g0983 Cec10g1014 Cco10g0978 Clacu10g1005 Cmu10g1788 Cre10g1161 . . Cone3ag1048 Cone10ag1064 . . . . . . . . . . . . . Cmo04g00461 Cmo16g00323 . . . . Cpe14g00252 Cpe01g00387 Bhi11g01101 Tan01g0604 . . . Mch10g0407 . . . . . . . . Lsi03g01005 . . Cme07g02212
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012138 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00059 Blo_Chr03 FPKM 10.762199 12.320667 2.444741 2.535704 9.295096 9.590422 10.272475 7.078619 5.867385 5.037839