Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00060 ATGTCCATCCCGAGGCAAAATGGTGTGCGTCATGATGATGTGGATCACTCAGGCTATGACATTCAACTCACTGGACTTTGGCTTCTTGTACGAGCCAATCTTGGGATCCCGGTGCAACAATCTAAGCACTGTCAGCCCTTCTCCTCGTCTGATGAAAGACCAGTGCACCTCATGCCGGCCATTGTTGAGACTGCCATTGAGGTTGAGGTTGTGCTTCAACCTCAGCTCCTCCATCTTCACCCGCCGCGGGGATGCTCCAGCTTGCACCGCGACGGGGCTGCTTTTGCCATAAGTGCTCCATCTTGCACTGCGGCGGTTGTTTCTTTCGCCGCGGGTGCTCCATCTTGCACCGTGGCTAGTACACTGAAAATGAGAGAGTGCATCTCGATCCACATCGGCCAGGCCGGTATTCAGGTCGGAAATGCCTGCTGGGAACTTTACTGTCTCGAGCACGGTATCCAGCCTGATGGCCAAATGCCGAGTGACAAGACTGTTGGTGGAGGTGATGATGCCTTTAACACTTTCTTCAGTGAAACTGGTGCTGGCAAACATGTTCCTCGAGCTGTATTTGTTGATCTCGAGCCCACAGTCATTGACGAGGTCAGGACTGGAGCTTACCGTCAGCTCTTCCACCCAGAGCAGCTTATCAGTGGCAAGGAAGATGCTGCCAACAATTTTGCCCGTGGTCATTATACAATTGGGAAGGAGATTGTTGACCTCTGCCTGGACCGAATCAGAAAGCTTGCTGATAACTGCACTGGTCTTCAAGGGTTCCTTGTTTTCAATGCTGTTGGTGGTGGCACTGGTTCTGGGCTTGGCTCGCTCCTTTTAGAACGTTTATCTGTTGACTACGGAAAGAAATCCAAGCTGGGTTTCACTGTTTATCCCTCCCCACAGGTTTCAACTTCTGTTGTTGAACCATACAACAGCGTTCTGTCAACTCACTCCCTCCTCGAGCATACTGATGTTTCTGTCCTCCTTGACAATGAGGCCATTTATGACATATGCAGGCGCTCCCTAGACATTGAGAGACCCACTTACACTAACCTCAATCGATTAGTCTCTCAGGTGATTTCTTCATTGACTGCTTCTCTAAGGTTTGATGGCGCCTTGAATGTGGATGTTACTGAATTCCAGACCAATCTGGTCCCTTACCCAAGAATCCACTTCATGCTTTCTTCATATGCACCCGTTATTTCTGCGGAGAAGGCCTACCATGAACAACTTTCGGTGGCTGAAATCACAAACAGTGCCTTTGAACCCTCATCCATGATGGCAAAGTGTGATCCCCGCCATGGGAAGTACATGGCCTGCTGTCTTATGTACCGTGGAGATGTTGTACCCAAAGACGTCAATGCTGCAGTAGCCACCATCAAGACCAAGCGCACAATACAGTTTGTTGACTGGTGCCCCACTGGATTCAAGTGTGGCATAAACTACCAGCCACCAACTGTCGTCCCTGGAGGTGATCTTGCCAAGGTTCAGAGGGCTGTTTGTATGATCTCCAACTCCACTAGCGTTGCAGAGGTATTCTCCCGTATCGACATCAAATTTGACCTCATGTATGCCAAGAGAGCCTTTGTGCACTGGTATGTTGGCGAGGGAATGGAGGAAGGAGAGTTCTCCGAAGCCCGCGAGGATCTTGCTGCTCTGGAGAAGGATTATGAGGAGGTTGGTCTGGAGACTGGTGAAGGTGACGAGGAGGATACCGAGTAA 1716 50.29 MSIPRQNGVRHDDVDHSGYDIQLTGLWLLVRANLGIPVQQSKHCQPFSSSDERPVHLMPAIVETAIEVEVVLQPQLLHLHPPRGCSSLHRDGAAFAISAPSCTAAVVSFAAGAPSCTVASTLKMRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDIKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGLETGEGDEEDTE 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2213716 2219029 - BLOR11241 Blo03g00060 57524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00060 571 PANTHER TUBULIN ALPHA CHAIN 124 566 - -
Blo03g00060 571 SMART Tubulin_4 172 369 IPR003008 GO:0005525
Blo03g00060 571 SMART Tubulin_C_4 371 516 IPR018316 -
Blo03g00060 571 Gene3D Helix hairpin bin 507 559 IPR023123 -
Blo03g00060 571 SUPERFAMILY Tubulin nucleotide-binding domain-like 124 367 IPR036525 -
Blo03g00060 571 Pfam Tubulin C-terminal domain 386 515 IPR018316 -
Blo03g00060 571 SUPERFAMILY Tubulin C-terminal domain-like 369 558 IPR008280 -
Blo03g00060 571 Coils Coil 541 561 - -
Blo03g00060 571 CDD alpha_tubulin 125 558 - -
Blo03g00060 571 PRINTS Alpha-tubulin signature 284 295 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo03g00060 571 PRINTS Alpha-tubulin signature 483 502 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo03g00060 571 PRINTS Alpha-tubulin signature 337 349 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo03g00060 571 PRINTS Alpha-tubulin signature 508 524 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo03g00060 571 PRINTS Alpha-tubulin signature 444 465 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo03g00060 571 PRINTS Alpha-tubulin signature 168 181 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo03g00060 571 PRINTS Alpha-tubulin signature 271 283 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo03g00060 571 PRINTS Alpha-tubulin signature 397 412 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo03g00060 571 PRINTS Alpha-tubulin signature 470 483 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo03g00060 571 PRINTS Alpha-tubulin signature 141 156 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo03g00060 571 PRINTS Alpha-tubulin signature 545 561 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo03g00060 571 PRINTS Alpha-tubulin signature 243 251 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo03g00060 571 PRINTS Alpha-tubulin signature 211 224 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo03g00060 571 Pfam Tubulin/FtsZ family, GTPase domain 126 336 IPR003008 GO:0005525
Blo03g00060 571 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 265 271 IPR017975 GO:0005525|GO:0005874|GO:0007017
Blo03g00060 571 Gene3D - 392 506 IPR037103 -
Blo03g00060 571 Gene3D Tubulin/FtsZ, GTPase domain 124 391 IPR036525 -
Blo03g00060 571 PANTHER TUBULIN 124 566 IPR000217 GO:0005874|GO:0007017
Blo03g00060 571 PRINTS Tubulin signature 133 153 IPR000217 GO:0005874|GO:0007017
Blo03g00060 571 PRINTS Tubulin signature 257 275 IPR000217 GO:0005874|GO:0007017
Blo03g00060 571 PRINTS Tubulin signature 176 195 IPR000217 GO:0005874|GO:0007017
Blo03g00060 571 PRINTS Tubulin signature 315 335 IPR000217 GO:0005874|GO:0007017
Blo03g00060 571 PRINTS Tubulin signature 301 314 IPR000217 GO:0005874|GO:0007017
Blo03g00060 571 PRINTS Tubulin signature 276 297 IPR000217 GO:0005874|GO:0007017
Blo03g00060 571 PRINTS Tubulin signature 218 229 IPR000217 GO:0005874|GO:0007017
Blo03g00060 571 PRINTS Tubulin signature 231 255 IPR000217 GO:0005874|GO:0007017
Blo03g00060 571 PRINTS Tubulin signature 503 531 IPR000217 GO:0005874|GO:0007017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00060 K07374 TUBA; tubulin alpha - ncol:116250590 857.825
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00917 Blo03g00060 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00060 Blo-Chr3:2213716 Blo17g00080 Blo-Chr17:598165 0 dispersed
Blo17g00691 Blo-Chr17:18418874 Blo03g00060 Blo-Chr3:2213716 5.85E-36 transposed
Blo02g00917 Blo-Chr2:35356766 Blo03g00060 Blo-Chr3:2213716 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g770 Blo02g00917 Blo03g00060 Bda06g01159 . Bpe07g00293 . . Bma12g00302 Cmo19g00553 Cmo11g01429 . . . . . Cpe04g00335 Cpe15g00428 . . . . . . . Cla02g00698 Cam02g0731 Cec02g0746 Cco02g0770 Clacu02g0742 Cmu02g0737 Cre02g1050 . . . . Lsi03g00600 Csa07g00669 . Cme01g00135 . . . . . . . . Sed07g1149 Cmo04g00462 Cmo16g00324 Cma11g01691 Cma19g00539 Car11g01152 Car19g00396 Cpe14g00253 Cpe01g00388 Bhi11g01102 Tan01g0605 Cmetu08g1396 . Hepe07g0394 Mch10g0408 . . . . . . . . Lsi03g01006 . Chy01g00146 Cme07g02211
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000221 6 4 6 6 4 5 8 5 5 5 5 5 8 5 5 9 5 12 9 5 5 4 4 5 5 4 5 6 3 5 168
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00060 Blo_Chr03 FPKM 0.52096 0.670087 2.615486 2.384945 12.83956 12.220647 13.079579 0.464187 0.439772 0.406159