Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00064 ATGGCGAGGGTTCATCCTCCCCACCTATCGAAGCCCGGTCTCCCCGCGACGGAGGACGACGCTGATACGACCCGTTTAGCCTCCGCGGCGTTGGCGGCATCCGTGGGCGCCGGGCTCCGGAAGAAGGGAATTGGGGTTAGAGCGTGGCTGCTTTTGGACTCTAGCGGTGTTGCGCAGGTCGTGGAGGTGGGCAAGCACGCAATCATGCGCCGGACGGGTTTGCCTGCGCGCGATCTTCGGATTTTGGATCCTTTATTGTCGTATCCTTCAACCATTTTGGGCCGTGAGAGAGCGATTGTGATTAATCTGGAGCATATTAAAGCCATTATCACTGCTCAAGAGGTGCTTCTGCTGAACTCTAGAGACCCCTCGGTGATGCCCTTTGTTGAAGAGCTTCAGAGACGGATACTGCGTCACCACCAAGCCACCATGGCACAACTGAGCATAACAAATTGGGCACCTCCTCTTGAAACATTGGTTTCAAAGGTGGGTATCAGACACTCAACTGAGATGATTTTCGTTGCGGATGAGGAGGGCGAGGGTGCTGATTCAAATTGGACTGATATTTATGATTTGGGAGAGCCAAGATCAAGTGCCGTAAGTCCAGAAAATTCATATCAAGGATTTCCACAGTCTCAAGAAGGAAAAGAGGAAGTCAAGGAAGGTGGGAAACAATGTCTTGATAACCACGATGGATTAAAGGTTCTCCCATTTGAGTTTGTTGCATTGGAGGCATGCCTTGAATCTACTTGCAGTAACTTAGAGAGCGAAGCTAAGACATTGGAGCAAGAGGCTCACCCAGCTTTGGATAAGCTGACTTCCAAGATTAGTACTCTCAATTTGGAACGTGTTCGTCAAATCAAAAGCCGATTGGTTGCAATAACTGGTCGAGTGCAAAAGATGAGGGATGAATTAGAACATTTGCTTGATGACGATGAGGATATGGCTGAGATGTATTTGACAGAGAAGTTGGCTCAACAACAACTAGAAGACTCTTCCACATCCTCAATGGATGATGGAAATGACATGGACGATGAAGCTCTTCCCTCAGATATCGACAACAGGCACGTTATTAATTTGAGGTTACCTGTCGAAATCTCACTAAATGGTGGTGGCATTTCGAGTAATTATGAAAGTGACATCCAGAACAATGACGAACCTCAACACCTGCTTTTTGGTGGACCTAATGCACTTAGCCATGGAACACATACGAGCACTACTCATAGTGCTTTAAGCAAGCAGCTTGATGTGGAGGAGCTTGAAATGCTTTTAGAGGCATACTTTGTTCAAATCGATGGTACTTCAAACAATCTATCTACGCTTCGCGAGTATGTGGACGACACAGAAGATTACATAAACATAATGTTGGACGACAAACAGAACCATCTTCTCCAAATGGGAGTTATGTTAACGACAGCTACTCTTGTGGTCAGCGCCTTTGTAGTGGTGGCTGGAATCTTTGGCATGAACATAAAGATCGAGCTCTTCAACTCGGATGTATCAGGTATGCCTGAATTTCTCTGGACGGTTGGTGGTAGTGCTGGAGGAAGTATCGTCCTCTACGTGATTGCCATTGCCTGGTGCAAATACAAACGTTTGCTTGAGTAA 1608 46.89 MARVHPPHLSKPGLPATEDDADTTRLASAALAASVGAGLRKKGIGVRAWLLLDSSGVAQVVEVGKHAIMRRTGLPARDLRILDPLLSYPSTILGRERAIVINLEHIKAIITAQEVLLLNSRDPSVMPFVEELQRRILRHHQATMAQLSITNWAPPLETLVSKVGIRHSTEMIFVADEEGEGADSNWTDIYDLGEPRSSAVSPENSYQGFPQSQEGKEEVKEGGKQCLDNHDGLKVLPFEFVALEACLESTCSNLESEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKMRDELEHLLDDDEDMAEMYLTEKLAQQQLEDSSTSSMDDGNDMDDEALPSDIDNRHVINLRLPVEISLNGGGISSNYESDIQNNDEPQHLLFGGPNALSHGTHTSTTHSALSKQLDVEELEMLLEAYFVQIDGTSNNLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIKIELFNSDVSGMPEFLWTVGGSAGGSIVLYVIAIAWCKYKRLLE 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2282535 2286239 + BLOR11245 Blo03g00064 57528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00064 535 Coils Coil 244 264 - -
Blo03g00064 535 Gene3D - 40 120 - -
Blo03g00064 535 PANTHER MAGNESIUM TRANSPORTER MRS2-D-RELATED 157 535 - -
Blo03g00064 535 MobiDBLite consensus disorder prediction 198 212 - -
Blo03g00064 535 Pfam CorA-like Mg2+ transporter protein 414 525 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Blo03g00064 535 PANTHER MAGNESIUM TRANSPORTER MRS2-D-RELATED 21 151 - -
Blo03g00064 535 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 21 151 IPR039204 -
Blo03g00064 535 Coils Coil 530 535 - -
Blo03g00064 535 MobiDBLite consensus disorder prediction 196 223 - -
Blo03g00064 535 Gene3D Magnesium transport protein CorA, transmembrane region 217 463 - -
Blo03g00064 535 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 157 535 IPR039204 -
Blo03g00064 535 CDD Mrs2_Mfm1p-like 49 533 IPR039204 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00064 - - - mnt:21394404 671.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00064 Blo-Chr3:2282535 Blo10g00506 Blo-Chr10:11257200 3.40E-111 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g735 . Blo03g00064 Bda06g01175 . Bpe07g00288 . . Bma12g00295 Cmo19g00556 Cmo11g01427 . . . . . Cpe04g00333 . . . . . . . . Cla02g00695 Cam02g0728 Cec02g0743 Cco02g0767 Clacu02g0739 Cmu02g0734 Cre02g1047 . Cone8ag1071 Cone3ag1040 . . Csa07g00673 . Cme01g00132 . . . . . . . . . . . Cma11g01693 Cma19g00542 Car11g01150 Car19g00399 . . . . . . . . . . . . . . . . . . Chy01g00142 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo10g00506 . 1 443 MRS2 Gene Family AT1G16010 82.7 5.3e-199 690.6
Blo16g01085 . 40 420 MRS2 Gene Family AT1G16010 55.9 2.6e-113 406.0
Blo01g00099 . 1 368 MRS2 Gene Family AT5G64560 81.3 5.2e-163 570.9
Blo03g00064 . 40 535 MRS2 Gene Family AT3G19640 62.8 2.9e-150 528.9
Blo03g00296 . 63 465 MRS2 Gene Family AT3G58970 67.2 5.2e-138 488.0
Blo16g01085 . 13 420 MRS2 Gene Family AT2G03620 64.2 7.0e-132 467.6
Blo10g00506 . 13 443 MRS2 Gene Family AT2G03620 52.3 9.8e-110 394.0
Blo01g00099 . 1 330 MRS2 Gene Family AT5G09690 76.2 6.9e-132 467.2
Blo01g00099 . 12 290 MRS2 Gene Family AT5G09720 66.0 9.3e-91 330.5
Blo10g00506 . 1 443 MRS2 Gene Family AT1G80900 83.3 3.1e-199 691.4
Blo16g01085 . 25 420 MRS2 Gene Family AT1G80900 53.3 4.5e-113 405.2
Blo03g01303 . 1 415 MRS2 Gene Family AT5G22830 66.0 1.4e-138 490.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005959 4 0 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00064 Blo_Chr03 FPKM 6.629743 6.701859 107.232773 112.528358 260.930328 298.768768 261.252502 38.930901 35.373947 34.337955