Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00066 ATGTCTCAGTCTCCGAACAACTCCGCTGCCTCTAGCTTGTTCTGTGGGGAGGACGCTGGCTACGTTGTCTCTGACGACTGGATCTCCGATACTCTCTCTTCCCCTTCACTACCGTCCCATTTCTCTCCTTCGTCCGATGAGGCCGCCATTGTTGAACTCTTTAAATCGGAGGCCAACCACATGCCTCACGCCGACTATCTCCGGCGATGTCGCAACCGTTCGATCGACGCTAGCGCCCGACAAGATTCCATTAACTGGATCTTGAAGGTATTTTACATGCAGGTGCACTCATTCTATCGGTTCAAACCGGTAACTGCGCTTCTCTCCGTCAACTACCTCGACCGCTTCCTCTCCTCCAATTATCTTCCGCGACCAAACGGGTGGCCGTTCCAGCTTTTATCAGTGGCGTGCTTATCCCTTGCGGCGAAAATGGAGGAGCCGGAGGTCCCTCTCCTCCTCGACCTTCAAATGTTCGAACCCAAACATATTTTCCAGCCGAAAACGGTTCAGCGAATGGAGCTTTGGGTAATGGCCAAACTCCATTGGAGATTACGCTCTATCACTCCTTACGATTTTCTCCACCCTTTTATCTCCAAGCTTCCATCTTCATCCTCTTCCTCCAATGGCGAGCACGCTGCTAAGATTTTCTCGGCTTCCTCCGATCTCATTCTCGGCACTACTTGTGCGATCGATTTCTTGGGTTTTTCGCCGTCGACAATAGCTGCCGCCGCCGTCATCTGTGCCGCCGGTGAAACTGTCCATTTCACCTCCGATGCATTCGATTTTCTTTTTGAACAGGAAATGGTGAGAAGCTGTCACCAACTAATGGAAGAGTATCTAATCGACACGTGTCCATGGTCTCTCCTTAAAGAGCGGAGACCAGAGCCGTCCGCTCCTCCGAGCCCAGTTGGGGTCCTCGACGCTGCTGCCTGTGGGAGCTGCGACACTCGTTCCGACAACCCCGGCCGCAGCACCCCAGCAGAGCCGCCAACTAAACGGCACCGGTCTGCGCCGGGATAA 1020 53.63 MSQSPNNSAASSLFCGEDAGYVVSDDWISDTLSSPSLPSHFSPSSDEAAIVELFKSEANHMPHADYLRRCRNRSIDASARQDSINWILKVFYMQVHSFYRFKPVTALLSVNYLDRFLSSNYLPRPNGWPFQLLSVACLSLAAKMEEPEVPLLLDLQMFEPKHIFQPKTVQRMELWVMAKLHWRLRSITPYDFLHPFISKLPSSSSSSNGEHAAKIFSASSDLILGTTCAIDFLGFSPSTIAAAAVICAAGETVHFTSDAFDFLFEQEMVRSCHQLMEEYLIDTCPWSLLKERRPEPSAPPSPVGVLDAAACGSCDTRSDNPGRSTPAEPPTKRHRSAPG 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2436702 2438052 - BLOR11247 Blo03g00066 57530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00066 339 Gene3D - 63 185 - -
Blo03g00066 339 SMART Cyclin_C_2 187 315 IPR004367 -
Blo03g00066 339 PANTHER CYCLINS 4 320 IPR039361 -
Blo03g00066 339 SUPERFAMILY Cyclin-like 169 281 IPR036915 -
Blo03g00066 339 SUPERFAMILY Cyclin-like 48 184 IPR036915 -
Blo03g00066 339 Gene3D - 52 260 - -
Blo03g00066 339 Pfam Cyclin, N-terminal domain 53 184 IPR006671 -
Blo03g00066 339 Pfam Cyclin, C-terminal domain 187 280 IPR004367 -
Blo03g00066 339 MobiDBLite consensus disorder prediction 292 339 - -
Blo03g00066 339 SMART cyclin_7 90 178 IPR013763 -
Blo03g00066 339 CDD CYCLIN 87 174 IPR013763 -
Blo03g00066 339 PANTHER CYCLIN-D2-1-LIKE 4 320 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00066 K18810 CYCD1_2_4; cyclin D1/2/4, plant - jre:109009685 399.438
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00926 Blo03g00066 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00066 Blo-Chr3:2436702 Blo04g01131 Blo-Chr4:18443841 1.33E-52 dispersed
Blo02g00926 Blo-Chr2:35829197 Blo03g00066 Blo-Chr3:2436702 5.98E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g725 Blo02g00926 Blo03g00066 . . Bpe07g00284 . Bma05g00646 . . . . . . . . . . . . . . . . . Cla10g00969 Cam10g0993 Cec10g1023 Cco10g0985 Clacu10g1013 Cmu10g1798 Cre10g1170 . . Cone3ag1037 Cone10ag1053 . . . . . . . . . Bpe05g00467 . . Sed06g1605 Cmo04g00470 Cmo16g00330 . . . . Cpe14g00259 Cpe01g00393 Bhi11g01121 Tan01g0618 Cmetu10g0407 . Hepe07g0403 Mch10g0416 . . . . . . . . Lsi03g01011 . . Cme07g02202
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004759 1 1 2 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00066 Blo_Chr03 FPKM 31.423277 30.251291 1.420143 1.064804 0.0 0.0 0.0 0.264671 0.223779 0.0