Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00069 ATGGGTGCTCCAAAGCAGAAATGGACACAAGAAGAAGAAGCAGCCCTTAAAGCCGGAATTGTTAAGCATGGAGCCGGAAAGTGGCGAACGATACTCAAGGATCCTGAATTCAGTGGTGTCTTATACCTGCGTTCGAATGTAGATCTAAAGGATAAGTGGAGAAACATGACTGTAATGGCTAATGGATGGGGCTCCAGAGAGAAAGCGAGGTTAGCACTCAAGAAGCAACATGTTCCTCAACTAGATGAGAATTCCTTGGCTGACAGTGTTATGGCCCAAAGCGATGAGGAATTAGTGGATGCTACGCCTTTGATTGTTTCTCCTGATAAGAATCAACATGCTAAGCCACACAGATCTACAGTAAGGTGGGACAATCTTATATTGGAGGCAATTTCTATGTTGAAGGAGCCTGGTGGTTCTAACAAGACAGCTATTGCTTCTTACATAGAGTACATAATAACAGGACATCTTGACCAATATTGGGCGCCTCCAGACTTCAAGAGACTGTTGTCCACAAAACTAAAGCTGTTGACAGTTAGCGGAAAACTAAGCAAGGTAAGCAAATTCAATAGGGGTAATTATAATGATAAGCTTTTGAGTGATTTGGCTATATTTTCCCAGGTAAAACGCAAATACAGGATTGCGCCAGCTTTAGCGATTTCTAACAAAAGAAGCTCCTCCATGTTATTGTTGGAGGGCCGGCAGAGGCTTTCCCCGAGAGTTGATAAGGACTTGATTATTCTTACCAAAGACCAGATTGACTTAGAATTAGGTAGAATGAGGATGATGACTGCCGAAGAGGCAGCTGAGGCAGCTGCTCTGGCAGTTGCAGAGGCAGAAGCAGCCATTGCAGAAGCCGAAGAGGCAGCCAGGGAGGCCGAGGCTGCTGAAGCTGACGCTGAAGCAGCTCAGGCTTTTGCAGAAGCTGCCCTGAAAACTCTCAATGGAAGGAACCTCCCAAAGACGGTAATCTTTCTAGAATGCATTTGCACTTTCACGCCTACTGAATGTCCATCGATTAATGCCTGA 1029 45.19 MGAPKQKWTQEEEAALKAGIVKHGAGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMTVMANGWGSREKARLALKKQHVPQLDENSLADSVMAQSDEELVDATPLIVSPDKNQHAKPHRSTVRWDNLILEAISMLKEPGGSNKTAIASYIEYIITGHLDQYWAPPDFKRLLSTKLKLLTVSGKLSKVSKFNRGNYNDKLLSDLAIFSQVKRKYRIAPALAISNKRSSSMLLLEGRQRLSPRVDKDLIILTKDQIDLELGRMRMMTAEEAAEAAALAVAEAEAAIAEAEEAAREAEAAEADAEAAQAFAEAALKTLNGRNLPKTVIFLECICTFTPTECPSINA 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2505086 2507277 - BLOR11250 Blo03g00069 57533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00069 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Blo03g00069 342 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Blo03g00069 342 Coils Coil 262 306 - -
Blo03g00069 342 PANTHER SINGLE MYB HISTONE 4 1 322 IPR044597 GO:0003691
Blo03g00069 342 CDD SANT_TRF 6 57 - -
Blo03g00069 342 SMART h15plus2 117 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Blo03g00069 342 Gene3D - 114 197 IPR036388 -
Blo03g00069 342 SMART sant 4 59 IPR001005 -
Blo03g00069 342 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 322 - -
Blo03g00069 342 Gene3D - 2 59 - -
Blo03g00069 342 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Blo03g00069 342 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 216 IPR005818 GO:0000786|GO:0003677|GO:0006334
Blo03g00069 342 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Blo03g00069 342 SUPERFAMILY Winged helix DNA-binding domain 117 187 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00069 Blo-Chr3:2505086 Blo16g00344 Blo-Chr16:10170173 3.01E-42 dispersed
Blo03g00069 Blo-Chr3:2505086 Blo04g01090 Blo-Chr4:16538748 3.57E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12080 PF00249 Myb_DNA-binding 3.40E-08 CL0123 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00069 K09422 - csin:114320961 325.865