Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00074 ATGAAGTTTATGAAACTTGGATCAAAGCCAGATGCATTACAGACAGATGGGAATAACATTCGGTATGTAGCAAGTGAGTTACGTTCAGATATCGTAGTTAATGTCAGTGAGGTGAAGTTTTACCTGCACAAGTTTCCTCTCCTATCGAAGAGCGTCCGATTGCAAAAATTGGTCACAGCAGCCACAACCGAAGAAAATGGCGATGAAGTTGACATTTCAGACATTCCTGGCGGTCCTTCTGCTTTCGAAATATGCGCCAAATTTTGTTATGGCATGATCGTTACCCTCAATGCATACAATGTTGTTGGGGCCAGGTGCGCGGCTGAGTACCTTGGAATGGATGAAATTATAGAGAGAGGCAATCTTATTTACAAGATTGACGTCTTCCTTAATTCGAGCGTTTTTCGGAGCTGGAAGGACTCGATAATTGTTCTTCAGACTAGCAAGTTAATATCGCCGATTTCAGAGGAGCTTAAATTGGTGAATAATTGCATAGAATCGATAACCACTAAAGCCTGCATACATGTTTCCAAAGTCAACTGGTCTTATTCGTATAATCGGAAGAAACTGGCGGAGGAGAATGTGTATGATCCAAACTCAAACAGTACGAGAAACCGGACAGTGCCTAAAGACTGGTGGGTCGAGGACATGTGCGAACTCGAAATCGATTTGTATAAGCGGGTCGTGATGAATATAAAGGCAAAATCGTCACTTTCTAATGAAGTGGTCGGGGATGCTGTGAAAGCTTATGCATATAGATGGCTCCCGGGCTTGAACAAGGGCGTGATTCAACGTGGGGACATGGAGAAATATCAATTGGTCGTGGATTCGATCGTGTGGCTCTTACCTGCCAAAAAAGGGTGTGTTTCTTGTAGTTTTTTGCTAAAGTTGTTGAAAGCAGCCTTTTGCGTGGACTGTGATTATATGTGTAAGAAAGAGTTGGTGAGGAGAATAGGACAGCAACTCGAGGAGGCTTCAGTTAGCGATCTTTTGATCCAGGCGAAGGAAGGAGAAACTATGGTTTACGATGTTAGAACAGTGCAGAAATTGGTGGAAGAGTTCAAGTTGCAGCATCAGAACGATGAGATTGAAATACTCGAAGAAGATCACGGCTGCGAAGGGCTGAGAAAATCGGGTATTTTATCCGATGCCTCCAAGCTGATGGTGGCGAAACTAATAGACGGGTATCTGGCCGAAATCGCAAAGGATCCAAATTTACCGCTTTTGATGTTCGTCGAGCTCGCGGAGTTGGTGTCCGACATCTCTCGACCTTCTCACGATGGGCTCTATCTGGCAATCGACACATTCCTCAAGGAGCACAACGGAATAAGCAAGAGCGAGAGGAAGAAAATATGCAAATTGATGGATTGCAAGAAGCTGTCGGTCGAGGCATGTGTGCACGCAGTGCAAAACGAGAGACTTCCATTACGAGTAGTTGTGCAAGTATTATTTTTCGAGCAAGTGAGAGCCTCCAAATCGTCTGGAAGCAGCACACCCGACCTGCCAAAGGGCATTAAGGACCTAAACAGTGGGTCTCTTGGGAGCTCAAGATCTGCCACTACAAACACAGAGGAAGAATGGGACATTCCAGCCACTGCCGAAGAGCTCAGGGCCCTTAAGGGCGAGCTGGCCTCCTTAAGGCTGACAAACGTGGCTGGAAATGGCAACCAAAATGGGGGAAGAGGCGGAATCGACAAAGCTGCAGTGAATAAAATGAAGGGTCTGATTAAGTCTAGGAAGATATTTGCAAAGCTGTGGCCAAGCAGAGGAGGGTCTGGGGAAAATAGCAGCTCGGACTCTTCAGAAAGTCCGGGCTCGGCAAACCCCGAAGAAGCCAAGTCTACACCTTCTGGAAATAGGAGACATTCAGTGTCT 1875 45.92 MKFMKLGSKPDALQTDGNNIRYVASELRSDIVVNVSEVKFYLHKFPLLSKSVRLQKLVTAATTEENGDEVDISDIPGGPSAFEICAKFCYGMIVTLNAYNVVGARCAAEYLGMDEIIERGNLIYKIDVFLNSSVFRSWKDSIIVLQTSKLISPISEELKLVNNCIESITTKACIHVSKVNWSYSYNRKKLAEENVYDPNSNSTRNRTVPKDWWVEDMCELEIDLYKRVVMNIKAKSSLSNEVVGDAVKAYAYRWLPGLNKGVIQRGDMEKYQLVVDSIVWLLPAKKGCVSCSFLLKLLKAAFCVDCDYMCKKELVRRIGQQLEEASVSDLLIQAKEGETMVYDVRTVQKLVEEFKLQHQNDEIEILEEDHGCEGLRKSGILSDASKLMVAKLIDGYLAEIAKDPNLPLLMFVELAELVSDISRPSHDGLYLAIDTFLKEHNGISKSERKKICKLMDCKKLSVEACVHAVQNERLPLRVVVQVLFFEQVRASKSSGSSTPDLPKGIKDLNSGSLGSSRSATTNTEEEWDIPATAEELRALKGELASLRLTNVAGNGNQNGGRGGIDKAAVNKMKGLIKSRKIFAKLWPSRGGSGENSSSDSSESPGSANPEEAKSTPSGNRRHSVS 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2640610 2643879 + BLOR11255 Blo03g00074 57538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00074 625 MobiDBLite consensus disorder prediction 586 625 - -
Blo03g00074 625 SUPERFAMILY POZ domain 22 118 IPR011333 -
Blo03g00074 625 Pfam BTB/POZ domain 26 118 IPR000210 GO:0005515
Blo03g00074 625 MobiDBLite consensus disorder prediction 590 625 - -
Blo03g00074 625 Gene3D Potassium Channel Kv1.1; Chain A 5 122 IPR011333 -
Blo03g00074 625 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY2 1 622 IPR029960 GO:0009958
Blo03g00074 625 MobiDBLite consensus disorder prediction 509 527 - -
Blo03g00074 625 MobiDBLite consensus disorder prediction 492 529 - -
Blo03g00074 625 ProSiteProfiles NPH3 domain profile. 211 489 IPR027356 -
Blo03g00074 625 ProSiteProfiles BTB domain profile. 29 98 IPR000210 GO:0005515
Blo03g00074 625 Pfam NPH3 family 211 465 IPR027356 -
Blo03g00074 625 PANTHER OS12G0117600 PROTEIN 1 622 IPR043454 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00074 - - - jre:109014208 905.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00933 Blo03g00074 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00384 Blo-Chr1:4379981 Blo03g00074 Blo-Chr3:2640610 2.54E-144 dispersed
Blo03g00074 Blo-Chr3:2640610 Blo17g00002 Blo-Chr17:13808 9.73E-147 dispersed
Blo05g00838 Blo-Chr5:30274994 Blo03g00074 Blo-Chr3:2640610 0 transposed
Blo02g00933 Blo-Chr2:36192749 Blo03g00074 Blo-Chr3:2640610 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g693 Blo02g00933 Blo03g00074 Bda06g01203 Bda08g00675 Bpe07g00274 . . Bma12g00281 . . . . . . . . . . . . . . . . Cla10g01000 Cam10g1022 Cec10g1053 Cco10g1018 Clacu10g1040 Cmu10g1824 Cre10g1197 . . Cone3ag1025 Cone10ag1040 . . . . . . . . . Bpe05g00475 . . . Cmo04g00485 Cmo16g00344 . . . . Cpe14g00271 Cpe01g00406 Bhi11g01141 . . . . Mch10g0450 . . . . . . . . Lsi03g01029 . . Cme07g02176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001152 3 7 3 2 3 2 2 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 8 2 2 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00074 Blo_Chr03 FPKM 75.01342 89.950401 206.350143 209.355453 14.753799 7.716003 14.395427 41.898136 36.865273 40.188942