Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00083 ATGAGGCAGAGGAGGATTTGTCCGTCTGTAGAGGCCGAGAGGAAGCTAGCAGAATTGAGGAAATTTACAAGGACATTGGAGGAGCTCTCGGGTCTACCCTGTTTGAGAATGTACATTGATGTTTGTAGGAGGCATGGAGTCCCACCGAATACTGCAATTTTATCCGGTTTCTTTAAGGCTGAGGTCAAAAGATCCGGCTATCAGCAATGTATCCTGGATATCTTCTTGGACCAACTTAAGGATATTGATTATCTCCCACTACTTGAAGTATGCATGGAACTTGATTCTTCTGAGATTGACGCAGTTGATATACGTAATGAATCTTCATGCGTGTTCAATGGGGAGTATGCTTTATCGTTGATGCGTGCTATTAATGGAAAACTTCGAAAAGTCGATCTCCACGATTTATCTTTTGGAAAGGATTTCCTTCGGGATTTGTCTCAGCGAGGTTTGAAATGTCAAGTTTTAACATTGAGGTCGTCTCATTTTCGGAAACTCAATTTAGTTGGGGAATTCACACGAGTACACACCCTCAACCTTGATTTCAGCACTTCGCTCACTAGTTTCCGTGAGGATTGCTTTGCTTGCATGCCCAATCTGAGGTTTCTGTCACTGTGTGACACAAGAATTTCAAATCTTTGGACAACGGCAGCAGCACTTTCTAAACTACCTTCTTTACTGGACCTTCGGTTTCAACGTTGGCTATGTTGCAATGATAACGCGCCTCATTCTCCAACAACTGGTTCAAAGTATGATGATAGAGGAGATCTCTGCCAACTAAGTGACTGGCTCCATGATGGTCATTTTTCTATTGATCCTAATTTAAGTGCTGGAGAAGAGATTAGGAACATACTTTCGCGTAACAGTGCAACTATTAATCATGATGTTCTTGGCATGATTGAAGATTCATCAGATGATAGCGAAGTGGATTTTTCTAATCACCCTCGAGAATTTGGCTTATCAGATGAATCCTCTAACTGGGCTTCTTGGTGGAATGGACAGGGTGATCTACAGGAGGTTTCTCCCGATATGTTGTTTGATGAGAATGAGGAAAGATTTACTATTGGTGCATATACCAGGCATATTGCTGATGTCTCATTAAAATATATTTCTCATAATGCTTCCCCTATATGCTTCGAAAAACATTATAGAGAGTACGTGATAGCTTCTTTACCCAATTTGAAAGTCTTGGATAACTTGCCCATTAGAAAGATCGACAGAGAAAGGGCTATTAGTACATATTCGCAGTACTTTGAGTATCTTCCGTATCAAAGGAAGCATAAGGAGAGTTTAGTGCGTATTATTCAGAACCGTGAAATCAATGCAAGCCAGAACCGTGAATGGAGTTCCAAGCAAAAGATTATTTATCCTTCGAGAAAGTCTCAAAGTTCTTATGCTAGATCTCTGTGTGCTGCAAAAGTGGGATCTTCTACTTGGCCTTTCCTGCGTCCTCTATCTGTTTTGAGTAATTTGGGAGATGGAGGCCAGAGATTTCGTCCCCGACAATTTGAGTACCATCCATCTGATCCTAGCCTTATGGTCTTTGGAACTTTAGATGGTGAAGTAGTTGTAGTGAATCACGAGAATGGGAAAATTGTTAGTTACATCCCATCGATTGGAGATATGAATAGTGTGCTAGGACTCTGTTGGCTCAAGAATCATCCCTCAAAGCTCATAGCGGGTTCAGACAATGGCTCGCTAAAATTGTATGACATCAGACACACGCCATCTACATTCAGAGGCATATACAGCATAGCTGGGTCAACAAGCTTTGAGGATTTTGACCAGTTAACTTCTGTTCACGTTAATTTGACGGATGAGCTGTTTCTTGCTAGTGGATATTCAAGAAATGTTGCATTATATGACATAAATACTGGGAGACTCTTGCAGGTCTTCACTGATATGCACCAGGAGCATATTAACGTCGTGAAGTTTGCAAACCATTCCCCATCAATTTTCGCTACTTCTTCATTTGATCAGGATGTCAAGATGTGGGATTTGAGGCAAAAACCAATTGTACCCTGCTATACGTCTTCGAGCTCTCGGGGAAATGTAATGATTTGTTTTTCTCCAGACGATCACTTTCTCCTCGTGTCAGCTGTTGACAATGAGGTCAGACAACTTCTGGCTGTTGATGGGAGGCTACACTTGAATTTTGATATTGCTTCCACCGGAAGCTCTCAGAATTATACTCGTTCTTACTACATGAATGGAAGAGACTACGTTATCAGCGGTAGCTGTGACGAACATGTTGTTCGTGTTTGTTGCGCTCAAACTGGGAGACGTCTTCGGGACATATCTTTAGAGGGAAAGGGATATGGGAATACCATGTTTGTGCAATCTCTGAGGGGAGATCTTTTCAAAGTGAGTTCTGAATTTACTACACCCAAAAACTTACTTTACTTGCTTCAAATCTCCCATTCTGTCATCGAGAGAGTAGTCTCTGCTTTAGTTCGAAAATTACGGATACTCTATGGGCTGCTTTGTGATTATAAGATACTTGTTTTAGTTCATGATCGAAATATCGTTTTGATCTACGGTTCGATCTCTTCTTTGCAGGAGTTCAACATGAGCATCTTAGCGGCCTATGTGCGACCTAGTTCGAGGTCCGAAATCGTCAAGATTTTGGAGAAGCAGATGCTGACGGTGGCGAAGGCGGTCGAGGATAAGATCGATGAAGAAATTGCAGTCCTGGATCGTCTTGATATTGATGATATGGAGGCGCTTAGAGAACGAAGGTTGCAGCAGATGAAGAAGATGGCAGATAAGCGTAGACGTTGGATCTCCTTGGGTCACGGTGACTACTCTGAGATCCCCGTAGAAAAAGACTTCTTCTCCATTGTCAAGGCCAGTGACCGCGTTGTCTGCCACTTCTATCGCGAAAACTGGCCATGCAAGGTGATGGACAAACACTTGAGCATCCTTGCGAAGCAACATATTGAAACACGGTTCGTGAAACTTAATGCAGAGAAAAGTCCTTTCTTGGCTGAGAAGCTAAAAATTGTTGTTCTTCCAACCCTTGCTCTTGTTAAGCATGCGAAAGTTGAAGACTATGTGGTGGGTTTTGATGAGCTTGGTGGAACAGACGAGTTCAGCACAGAGGAACTGGAAGAGAGGTTGGCTAAAAGTCAGGTCATCTTTTTTGAGGGTGAATCATCCTTAAATTCGTCAAAAACTAGTGCAAATAGCAGGACTGTCCGGAAAAGCTCAAAGCCAGACTCATCAGATTCAGATTAG 3237 42.29 MRQRRICPSVEAERKLAELRKFTRTLEELSGLPCLRMYIDVCRRHGVPPNTAILSGFFKAEVKRSGYQQCILDIFLDQLKDIDYLPLLEVCMELDSSEIDAVDIRNESSCVFNGEYALSLMRAINGKLRKVDLHDLSFGKDFLRDLSQRGLKCQVLTLRSSHFRKLNLVGEFTRVHTLNLDFSTSLTSFREDCFACMPNLRFLSLCDTRISNLWTTAAALSKLPSLLDLRFQRWLCCNDNAPHSPTTGSKYDDRGDLCQLSDWLHDGHFSIDPNLSAGEEIRNILSRNSATINHDVLGMIEDSSDDSEVDFSNHPREFGLSDESSNWASWWNGQGDLQEVSPDMLFDENEERFTIGAYTRHIADVSLKYISHNASPICFEKHYREYVIASLPNLKVLDNLPIRKIDRERAISTYSQYFEYLPYQRKHKESLVRIIQNREINASQNREWSSKQKIIYPSRKSQSSYARSLCAAKVGSSTWPFLRPLSVLSNLGDGGQRFRPRQFEYHPSDPSLMVFGTLDGEVVVVNHENGKIVSYIPSIGDMNSVLGLCWLKNHPSKLIAGSDNGSLKLYDIRHTPSTFRGIYSIAGSTSFEDFDQLTSVHVNLTDELFLASGYSRNVALYDINTGRLLQVFTDMHQEHINVVKFANHSPSIFATSSFDQDVKMWDLRQKPIVPCYTSSSSRGNVMICFSPDDHFLLVSAVDNEVRQLLAVDGRLHLNFDIASTGSSQNYTRSYYMNGRDYVISGSCDEHVVRVCCAQTGRRLRDISLEGKGYGNTMFVQSLRGDLFKVSSEFTTPKNLLYLLQISHSVIERVVSALVRKLRILYGLLCDYKILVLVHDRNIVLIYGSISSLQEFNMSILAAYVRPSSRSEIVKILEKQMLTVAKAVEDKIDEEIAVLDRLDIDDMEALRERRLQQMKKMADKRRRWISLGHGDYSEIPVEKDFFSIVKASDRVVCHFYRENWPCKVMDKHLSILAKQHIETRFVKLNAEKSPFLAEKLKIVVLPTLALVKHAKVEDYVVGFDELGGTDEFSTEELEERLAKSQVIFFEGESSLNSSKTSANSRTVRKSSKPDSSDSD 1078
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2768341 2791489 + BLOR11264 Blo03g00083 57547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00083 1078 Gene3D Glutaredoxin 914 1047 - -
Blo03g00083 1078 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 633 668 - -
Blo03g00083 1078 Pfam Thioredoxin 941 1021 IPR013766 -
Blo03g00083 1078 SMART WD40_4 529 571 IPR001680 GO:0005515
Blo03g00083 1078 SMART WD40_4 625 666 IPR001680 GO:0005515
Blo03g00083 1078 SMART WD40_4 484 526 IPR001680 GO:0005515
Blo03g00083 1078 SMART WD40_4 578 622 IPR001680 GO:0005515
Blo03g00083 1078 SUPERFAMILY L domain-like 88 226 - -
Blo03g00083 1078 Gene3D Ribonuclease Inhibitor 360 419 IPR032675 -
Blo03g00083 1078 Gene3D Ribonuclease Inhibitor 122 253 IPR032675 -
Blo03g00083 1078 SUPERFAMILY Thioredoxin-like 868 1044 IPR036249 -
Blo03g00083 1078 Coils Coil 906 926 - -
Blo03g00083 1078 SMART LRRcap_2 380 398 IPR003603 -
Blo03g00083 1078 ProSiteProfiles Trp-Asp (WD) repeats profile. 633 668 IPR001680 GO:0005515
Blo03g00083 1078 CDD Phd_like_TxnDC9 931 1041 - -
Blo03g00083 1078 PANTHER BNAC09G30780D PROTEIN 34 788 IPR046377 GO:0071493|GO:0080008
Blo03g00083 1078 Gene3D - 496 779 IPR015943 GO:0005515
Blo03g00083 1078 MobiDBLite consensus disorder prediction 1052 1078 - -
Blo03g00083 1078 MobiDBLite consensus disorder prediction 1052 1068 - -
Blo03g00083 1078 SUPERFAMILY WD40 repeat-like 496 766 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00083 - - - jre:108996385 1046.19
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00941 Blo03g00083 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00083 Blo-Chr3:2768341 Blo06g00141 Blo-Chr6:5596124 5.71E-34 dispersed
Blo02g00941 Blo-Chr2:36548261 Blo03g00083 Blo-Chr3:2768341 7.47E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g662 Blo02g00941 Blo03g00083 . Bda08g00669 . . Bma05g00670 . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1061 Cone8ag1094 . . . . . . . . . . . Bpe05g00486 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015699 2 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 10
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00083 Blo_Chr03 FPKM 5.0617 4.320223 10.151091 11.527872 14.607731 14.213469 14.701638 6.626192 6.712675 7.299906