Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00085 ATGGAGTCTGCCACAGAAAAATTGTTGTCTCCTTGTGAAGCTCTCATCAGCGATAATCAATGCAAGAATAGTTCATACCTCAATCAAGTTACGCCAGAACTAATACATGAATCTGATCATGCAAATCTACTTCTCGAATCAGCAGAGCAAGAATGTGAATCTGTTAAAAGGGACACACTAAAAACTAGTGCCAATGGGGATTCTGTAGTATTTTCTATAAATGTGAATCAAGATAACTTGGCACAAGCCTTGGAGCTTCCTCTTGATGATGGGAACAAAATTAGTCAGATTGGTGTTAAGAGATTTGATGACGATGAGAGTTGCTTTACAGGAATAACAAGGGAACAGTTAAACGAGCTACCTGAGTTGCACTATTATCAGATTGAATCAGTGAAAAATCTGCTAGAAGAAAATTACAGTGTAGCGTCCAGCCATTGTGAAAGTGATCCATTTCAACCGACCTCCAAAAACATGGCAGTTAAATTCAGTAGTGAAGGTTTGGAATTGCATTCAGAGGACACAGAACAGACAAAAGTGCAACAGAATATAATGCCACAAGAAGATGTCTCTGAAGGACTATCAAGTAAATTGTCAGAGAAAAATCATCTCATTGATTCTGAACTTGTTCAAAATAATCCAGCTGTTGTGGATATTGGTCAAGAAGTTGATCCACATGTTACTGATTGTTTTCTGGATGATGCTCTTGAACTTCCTTTGGTAAATGCATCAAATTCAGGTAAACAGTCAAAGTCTCTCATTGAAGATGTTCTCCAAAATTCTAGCGTTGAAGAGTTAGAAACACCAATTAAAAAGGCAGCCAAACATTCTAAACAAGTTAGCTGTCAAACTTCAAAATCTAGGCGGAAAAGATATATACTAAGATCATTGGGTCACACTGTCAGAGTTTTGCGCTCAAGGACAAGAGGGAATGCCACACCCTGTAAAGCAACTAACCCTGTCAGTAATGTTAGAAGCAGAAGAGATGAAAAAGGTAGAAAAAAGAATAGAAGAAAGGAGGTTCAAGTAGCTGACGAGTTTTCAAAAATTAGAAAATGTCTAAGATATTTACTCCATCGAATGACATATGAACAAAGCTTCATTGCTGCTTATTCTGGTGAAGGTTGGAAAGGATACAGCTTAGAGAAGTTAAAGCCAGAAAAGGAGCTTCAGCGGGCCACAAATGAAATAATGCGACGCAAGTTGAAGATAAGAGACCTATTTAAACATCTTGATTTGCTTTGTGTTGAGGGAAGATTTTCAGAATCTCTGTTCGATTCTGAAGGACAAATTGACAGTGAGGATATCTTTTGCGCAAAATGTGGATCAAAAGAAATGTCTACTACTGATGACATTATACTCTGTGATGGGCCTTGCGACCGTGGTTTCCACCAGTTCTGTTTAGAACCACCATTGCTGAATGAAGATATTCCACCAGATGATGAGGGTTGGCTATGCCCTGGTTGTGATTGCAAAGTTGACTGCATCGATTTGCTTAATGACTCTCAAGGAACAAATTATTCTCTCACTGACAGTTGGGAGAATGTTTATCCTGAGGCTGCTGCTGCTGCAGCTGCTGCAGCTGCTGGGCACAATAATGATCAGAACTTTGGCCTCCCTTCTGATGATTCAGATGATAATGATTTTGATCCAGATGGTCAAGAAACTGATGATCAGGGGGGAGATGAATCAAGTTCTGATGTATCTGAGAATAATTCTGAATCTGAAAAATTGGAGGCTTCGCCTAAAGACAACCAATATTTAGGACTTCCTTCTGATGATTCAGACGATGATGATTACAATCCTGGGGCTCCAGATACTGAAAAAAATATTAAGTCAGAAAGTTCTAGTTCAGATTTTACATCGGATTCTGAGAATCTTGCAGCCATTCTTGAAGATGATGGGCCTTCTAGGAATGGAAATGACTCTGTCTCTTCAACACCAAATGGTACCAATTCCCGTAGAGGAATCGACAAAAAAAGCAGCAAAAATGAACGGGGAAAGCATTCATTGAAGGACGATCTTTCATCTATAGTAGAGTTGGGACCTTTAAATGATGGACTTTCACCTATTGTCAGCAGACGGCATGTGGAGCGATTGGACTATCAGAAGCTACATGTTGAGACATATGGAAATGTTTCTTCTGACTCAAGTGATGATGAGGATTGGACTGATATTGCTGCACAGAGGAAGAAAAATTGTGGACTGGTTTCCCCAGCTGAACAAAATGGAAAATCTTTAGTTGTTAAGGAAGATTTTGTTCTGGGTAAGCATAATGTTAAGGGGAGTGAAATCACTCCGAGAAAGAGTGCTCGTCAGACACGAACAGTTGAAGATGCAAATGATTATTTGATAAAAGCACAAGAAGGATTCTCCAGTCCTGGTTCAACTGGCGGAAGAGCTAAATCTACTTTCAGTAAACTTGGGGAAGCAGTAGTTCAGAGACTTCGTATATCATTCAACGAAAATCAGTACCCAGACAAACGTGCAAAAGAAACTTTGGCTAAAGATCTAGGAATCAATTTCAAGCAGGTTAGCAAATGGTTTGAAAACACTCGATGGAGTACACGGCATCCATCGCATGCGAAGGCAACTGCAAATGCAAATATAGATGAATCTGAAAGCACTTTGCAGAAAGGCACTCCAACGTCCCGCTCAACCATAAAAGAGCCAGATTTGGATACTGGTCGCAGAGGTGGCACTCGCAGCAGTGCTCATCTCATAAAATCTTCCAGGGCCAGTGATGTTGTTCCACCTTGCGAAAGTGAGGATGCAAAGGATGGCATTTCGGGAAGTCATACGGCCACTAGAGAAGAACCTAATTCCATTAGATCCAGAAAAAGAAAAGGCAGATCAGACCATATTGCTGCCGATACTGATGCTAGTATTATGAAGAAACAAAAGCCTCTTTCTGGGTCATCAAAAGCCCATGAAGGTCAAGCCAATGGCCATATTAGGACAAGAAGACAGACATTGATTGCTACCAATACTGATAGTACACAAAAGCCTCTTGTTGAGTCATCAAAAGCCAACGCAGATCAAGAAAATCACCGGATTAGGACAAGAAGACAGAAATTGATTGCTTAA 3084 40.14 MESATEKLLSPCEALISDNQCKNSSYLNQVTPELIHESDHANLLLESAEQECESVKRDTLKTSANGDSVVFSINVNQDNLAQALELPLDDGNKISQIGVKRFDDDESCFTGITREQLNELPELHYYQIESVKNLLEENYSVASSHCESDPFQPTSKNMAVKFSSEGLELHSEDTEQTKVQQNIMPQEDVSEGLSSKLSEKNHLIDSELVQNNPAVVDIGQEVDPHVTDCFLDDALELPLVNASNSGKQSKSLIEDVLQNSSVEELETPIKKAAKHSKQVSCQTSKSRRKRYILRSLGHTVRVLRSRTRGNATPCKATNPVSNVRSRRDEKGRKKNRRKEVQVADEFSKIRKCLRYLLHRMTYEQSFIAAYSGEGWKGYSLEKLKPEKELQRATNEIMRRKLKIRDLFKHLDLLCVEGRFSESLFDSEGQIDSEDIFCAKCGSKEMSTTDDIILCDGPCDRGFHQFCLEPPLLNEDIPPDDEGWLCPGCDCKVDCIDLLNDSQGTNYSLTDSWENVYPEAAAAAAAAAAGHNNDQNFGLPSDDSDDNDFDPDGQETDDQGGDESSSDVSENNSESEKLEASPKDNQYLGLPSDDSDDDDYNPGAPDTEKNIKSESSSSDFTSDSENLAAILEDDGPSRNGNDSVSSTPNGTNSRRGIDKKSSKNERGKHSLKDDLSSIVELGPLNDGLSPIVSRRHVERLDYQKLHVETYGNVSSDSSDDEDWTDIAAQRKKNCGLVSPAEQNGKSLVVKEDFVLGKHNVKGSEITPRKSARQTRTVEDANDYLIKAQEGFSSPGSTGGRAKSTFSKLGEAVVQRLRISFNENQYPDKRAKETLAKDLGINFKQVSKWFENTRWSTRHPSHAKATANANIDESESTLQKGTPTSRSTIKEPDLDTGRRGGTRSSAHLIKSSRASDVVPPCESEDAKDGISGSHTATREEPNSIRSRKRKGRSDHIAADTDASIMKKQKPLSGSSKAHEGQANGHIRTRRQTLIATNTDSTQKPLVESSKANADQENHRIRTRRQKLIA 1027
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2836195 2842246 + BLOR11266 Blo03g00085 57549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00085 1027 Gene3D - 800 869 - -
Blo03g00085 1027 MobiDBLite consensus disorder prediction 322 336 - -
Blo03g00085 1027 MobiDBLite consensus disorder prediction 637 654 - -
Blo03g00085 1027 CDD homeodomain 799 859 IPR001356 GO:0003677
Blo03g00085 1027 SMART HOX_1 799 862 IPR001356 GO:0003677
Blo03g00085 1027 SUPERFAMILY Homeodomain-like 792 857 IPR009057 -
Blo03g00085 1027 MobiDBLite consensus disorder prediction 854 1027 - -
Blo03g00085 1027 MobiDBLite consensus disorder prediction 607 624 - -
Blo03g00085 1027 Pfam Homeodomain 811 853 IPR001356 GO:0003677
Blo03g00085 1027 ProSiteProfiles 'Homeobox' domain profile. 798 858 IPR001356 GO:0003677
Blo03g00085 1027 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 245 881 - -
Blo03g00085 1027 Pfam PHD-finger 436 491 IPR019787 -
Blo03g00085 1027 Coils Coil 38 58 - -
Blo03g00085 1027 ProSiteProfiles Zinc finger PHD-type profile. 434 491 IPR019787 -
Blo03g00085 1027 MobiDBLite consensus disorder prediction 854 888 - -
Blo03g00085 1027 Coils Coil 1008 1027 - -
Blo03g00085 1027 SUPERFAMILY FYVE/PHD zinc finger 426 494 IPR011011 -
Blo03g00085 1027 ProSitePatterns Zinc finger PHD-type signature. 437 488 IPR019786 -
Blo03g00085 1027 ProSitePatterns 'Homeobox' domain signature. 833 856 IPR017970 GO:0000981|GO:0006355
Blo03g00085 1027 MobiDBLite consensus disorder prediction 526 688 - -
Blo03g00085 1027 MobiDBLite consensus disorder prediction 540 563 - -
Blo03g00085 1027 MobiDBLite consensus disorder prediction 965 1009 - -
Blo03g00085 1027 CDD PHD_PRHA_like 436 488 IPR045876 -
Blo03g00085 1027 SMART PHD_3 436 489 IPR001965 -
Blo03g00085 1027 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 430 493 IPR013083 -
Blo03g00085 1027 MobiDBLite consensus disorder prediction 655 674 - -
Blo03g00085 1027 PANTHER HOMEOBOX PROTEIN HAT3.1 245 881 - -
Blo03g00085 1027 MobiDBLite consensus disorder prediction 918 960 - -
Blo03g00085 1027 MobiDBLite consensus disorder prediction 308 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00085 - - - qlo:115967836 696.041
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00944 Blo03g00085 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00085 Blo-Chr3:2836195 Blo06g01057 Blo-Chr6:33941124 3.14E-06 dispersed
Blo02g00944 Blo-Chr2:36717141 Blo03g00085 Blo-Chr3:2836195 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g656 Blo02g00944 Blo03g00085 Bda06g01216 Bda08g00666 Bpe07g00262 . Bma05g00672 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1009 Cone10ag1026 . . . . . . . . . Bpe05g00488 . . . Cmo04g00496 Cmo16g00355 . . . . Cpe14g00278 Cpe01g00416 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003741 2 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12082 PF00046 Homeodomain 1.60E-08 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00085 Blo_Chr03 FPKM 2.520729 3.173624 3.100582 2.274801 3.663715 5.152095 4.748728 0.478795 0.541904 0.808599