Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00091 ATGGCTGCTCCTGCATCGGCTATCAAATTGACGGAGGGAGCAGTGATGGTAGTATGCAAGAGGGAGGTCACGGCTGAGGAATATCAGCCGGTGGTTCAAGTGGTCGACTTGAAACTAGTGAATACTCAGGCGCATCAGACCAGCAGCGAGAGGTACAGACTGTTGCTCTCTGATGGGACGCATTACCAGCAAGGGATGCTAGGAACTCAGCTAAATGAAATGGTTAAGACGGGGAGGTTACAGAAAGGTTCAGTTGTTCAATTGAGGCAGTATGTCTGCAATCCAGTTCAAGATCGCCTGTATGTGTACCTCATCCTTCCATTTAATTTTTTAGATTCTCCGATGTTCAAAGAAATGGTATTTAGTTACGGGAAAAGAATGGGGGACTTCTACTTTCCAGAATCTTTTGTATTTGAAATTTCAAGAATTATAATTGTCATTGAGATGGATTTGATTATGGAAAAATGTGATATCCTTGGCGAACCGGTAGCAGCGCCAAGATTGGCGAGTGGAACAATGAATGCAAACCCCCAATCATCTTCTGGCATTCTGAGTGGTGCCCAGGTTAATAAACCAGTTGTTTCGGGGACATCTCTTGAACATCAGAAGACGAATCAGCCTCATGGTGGTTATTATTCTAACAATTCTGGTTCAGAGAGTTTTCCTGCTTCAAACTCTAGATTTAATGCTTCAGCTACTTTAAGCGGGTCTTATAGTGATCAGAAGATGGGTTTTAACAATAACAAGTCAGTTGCTTCACGGCTACCTCCCAATTCGTATGTGCCAGGATATCAAAATTCACCTCCCATGTATATGAATAGAGGCCCCGTTGCTAAAAATGAAGCACCCCCTAGGATTATACCTATAAGTGCTCTGAATCCTTACCAGGGTAGGTGGACGATCAAGGCTAGAGTAACGGCAAAAGGAGAACTTAGGCACTACAATAATCCTCGAGGTGATGGAAAAGTTTTCTCTTTTGATCTTCTTGATTCTGATGGTGGAGAAATTCGGGCAACCTGCTTTAATGCAGTGGCTGATCAGTTTCACAGCCAGATTGAAGCAGGCAAAGTATACTTTATTTCTAAGGGTACTTTAAAACCTGCTCAAAAAAATTTCAACCACCTCTCCAATGACCTAGAAATATTTATGGAGAGCTCATCCACTATACAACCATGCCTTGAGGAGGACAACTCTATTCCTCGACAGCAGTTTCATTTCCGTCCCATTAGTGATGTTGAAGGCTTGGATAATAACATGATAGTTGATGTTATTGGCGTAGTTTCCTCCATAAATCCTTCAACTTCCATAATGAGGAAAAATGGTGTTGAAACTCAAAAGAGGACTCTCCAGTTGAAAGACATTTCTGGTCGAAGTGTTGAATTGACTCTGTGGGGAGCTCTTTGCTCGACAGATGGACAAAGGCTGCAAAACCTGTGTGATTCTGGGGTATTTCCAGTTCTGGCAGTGAAATCTGCTAGAGTAAGTGACTTTAATGGGAAGGCAGTGGGTACTATTTCTACAAGTCAGCTTTTCGTCGAGCCAGAATTTCCTGAGGCACATAGACTGAGAGATTGGTTTGAAAAGGAAGGGAGGAGCACTCCTTCTGTGTCTATCTCCAGGGAAGTGTCTGGTTTGGGTAGGACAGATACACGCAAAACTATTTCACGTATTAAGGATGAGAAGTTGGGGACTTCTGAGAAGCCAGATTGGATCACTGTCAGTGCAACTGTTTCATTCATAAAGGTTGACAACTTCTGCTACACAGCATGCCCAGTCATGATTGGGGACAGACAGTGCAACAAAAAGGTTACCAATAATGGTGACGGGAAATGGAGGTGCGAGAGGTGCGATCAATTGGTTGCAGAATGCGACTACAGGTATATACTGCAGCTTCAAATACAGGACCATACTGGCTTAACATGGGTGACTGCATTTCAAGAAACTGGGGAGGAGATCATGGGCATATCTGCAAAGAATTTGTACTATTTGAAGTATGAAGAGCAGGATGATGAGAAATTTGCAGAAATCATTCGTAAGGTTCTTTTCACAAGTTTCATTTTTAAGTTGAAAGTGAAAGAAGAGACGTATAGTGATGAACAAAGGGTGAAGTCCACCGTAGTGAAAGCAGAAAAGGTAAACTTTTCAGCAGAGTCCAGATATCTATTGGATCTGTTGAATAAACTTAGACTAGAGAGCTCAGATTCTTTTGTCAGTAAGACAGAAAATAATGTCAATAACCCTGGATTTAACCCATCTGGAGTTGGGAGCTTCGGCAATTCACAGCATATCATGGCCCCTCAAGTTGGAAGCTTTGGAGGTAGTGGTTATGGCATTCGGGATGTTGGTGTTAAACCCAACCAATCCAATCAGTATGGGCACCAGTATGATATTTCTAGGGGTCATCCACCTCATTCGCACGTGTACTGCAACAGTTGTGGTGGCACAGGTCACAACTCCATGAACTGTCCAAGTATAATGAATAGTCCAGCAACGGCTCAGTCATCTTTAGGGATGTATCCGAATAGAGCTTCTGGGGGAGTTTCTGGCGGCACTGCTGGTGAATGTTTTAAGTGCCACAGGACTGGGCACTGGGCAAGAGATTGCCCTGGCCTGTCTTCTATTCCCCCAGCTTATGGTAGTGGTGGTGGCTATGCAGCTGTATGA 2664 43.47 MAAPASAIKLTEGAVMVVCKREVTAEEYQPVVQVVDLKLVNTQAHQTSSERYRLLLSDGTHYQQGMLGTQLNEMVKTGRLQKGSVVQLRQYVCNPVQDRLYVYLILPFNFLDSPMFKEMVFSYGKRMGDFYFPESFVFEISRIIIVIEMDLIMEKCDILGEPVAAPRLASGTMNANPQSSSGILSGAQVNKPVVSGTSLEHQKTNQPHGGYYSNNSGSESFPASNSRFNASATLSGSYSDQKMGFNNNKSVASRLPPNSYVPGYQNSPPMYMNRGPVAKNEAPPRIIPISALNPYQGRWTIKARVTAKGELRHYNNPRGDGKVFSFDLLDSDGGEIRATCFNAVADQFHSQIEAGKVYFISKGTLKPAQKNFNHLSNDLEIFMESSSTIQPCLEEDNSIPRQQFHFRPISDVEGLDNNMIVDVIGVVSSINPSTSIMRKNGVETQKRTLQLKDISGRSVELTLWGALCSTDGQRLQNLCDSGVFPVLAVKSARVSDFNGKAVGTISTSQLFVEPEFPEAHRLRDWFEKEGRSTPSVSISREVSGLGRTDTRKTISRIKDEKLGTSEKPDWITVSATVSFIKVDNFCYTACPVMIGDRQCNKKVTNNGDGKWRCERCDQLVAECDYRYILQLQIQDHTGLTWVTAFQETGEEIMGISAKNLYYLKYEEQDDEKFAEIIRKVLFTSFIFKLKVKEETYSDEQRVKSTVVKAEKVNFSAESRYLLDLLNKLRLESSDSFVSKTENNVNNPGFNPSGVGSFGNSQHIMAPQVGSFGGSGYGIRDVGVKPNQSNQYGHQYDISRGHPPHSHVYCNSCGGTGHNSMNCPSIMNSPATAQSSLGMYPNRASGGVSGGTAGECFKCHRTGHWARDCPGLSSIPPAYGSGGGYAAV 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3077096 3080382 + BLOR11272 Blo03g00091 57555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00091 887 SUPERFAMILY Nucleic acid-binding proteins 8 113 IPR012340 -
Blo03g00091 887 Pfam OB-fold nucleic acid binding domain 299 381 IPR004365 GO:0003676
Blo03g00091 887 Gene3D - 285 394 IPR012340 -
Blo03g00091 887 Pfam Replication factor-A C terminal domain 570 721 IPR013955 -
Blo03g00091 887 Pfam Replication protein A OB domain 409 512 IPR031657 -
Blo03g00091 887 PANTHER REPLICATION FACTOR A 1, RFA1 7 764 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Blo03g00091 887 MobiDBLite consensus disorder prediction 194 224 - -
Blo03g00091 887 ProSiteProfiles Zinc finger CCHC-type profile. 855 869 IPR001878 GO:0003676|GO:0008270
Blo03g00091 887 CDD RPA1_DBD_C 554 720 IPR013955 -
Blo03g00091 887 MobiDBLite consensus disorder prediction 245 266 - -
Blo03g00091 887 SUPERFAMILY Nucleic acid-binding proteins 404 532 IPR012340 -
Blo03g00091 887 CDD RPA1_DBD_A 288 391 - -
Blo03g00091 887 Gene3D - 536 728 IPR012340 -
Blo03g00091 887 Gene3D - 8 165 IPR012340 -
Blo03g00091 887 Gene3D - 805 873 - -
Blo03g00091 887 Pfam Replication factor-A protein 1, N-terminal domain 10 106 IPR007199 GO:0003677|GO:0005634|GO:0006260
Blo03g00091 887 Gene3D - 397 535 IPR012340 -
Blo03g00091 887 PANTHER REPLICATION PROTEIN A SUBUNIT 7 764 - -
Blo03g00091 887 SUPERFAMILY Nucleic acid-binding proteins 285 398 IPR012340 -
Blo03g00091 887 SUPERFAMILY Nucleic acid-binding proteins 550 728 IPR012340 -
Blo03g00091 887 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 252 727 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Blo03g00091 887 SMART c2hcfinal6 808 824 IPR001878 GO:0003676|GO:0008270
Blo03g00091 887 SMART c2hcfinal6 854 870 IPR001878 GO:0003676|GO:0008270
Blo03g00091 887 MobiDBLite consensus disorder prediction 245 267 - -
Blo03g00091 887 CDD RPA1N 13 105 IPR007199 GO:0003677|GO:0005634|GO:0006260
Blo03g00091 887 SUPERFAMILY Retrovirus zinc finger-like domains 846 873 IPR036875 GO:0003676|GO:0008270
Blo03g00091 887 Pfam Zinc knuckle 854 869 IPR001878 GO:0003676|GO:0008270
Blo03g00091 887 CDD RPA1_DBD_B 420 527 - -
Blo03g00091 887 ProSiteProfiles Zinc finger CCHC-type profile. 809 824 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00091 Blo-Chr3:3077096 Blo16g00969 Blo-Chr16:37955158 0 dispersed
Blo03g00091 Blo-Chr3:3077096 Blo06g01214 Blo-Chr6:35741905 9.42E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00091 K07466 - csv:101211358 1142.1