Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00091 ATGGCTGCTCCTGCATCGGCTATCAAATTGACGGAGGGAGCAGTGATGGTAGTATGCAAGAGGGAGGTCACGGCTGAGGAATATCAGCCGGTGGTTCAAGTGGTCGACTTGAAACTAGTGAATACTCAGGCGCATCAGACCAGCAGCGAGAGGTACAGACTGTTGCTCTCTGATGGGACGCATTACCAGCAAGGGATGCTAGGAACTCAGCTAAATGAAATGGTTAAGACGGGGAGGTTACAGAAAGGTTCAGTTGTTCAATTGAGGCAGTATGTCTGCAATCCAGTTCAAGATCGCCTGTATGTGTACCTCATCCTTCCATTTAATTTTTTAGATTCTCCGATGTTCAAAGAAATGGTATTTAGTTACGGGAAAAGAATGGGGGACTTCTACTTTCCAGAATCTTTTGTATTTGAAATTTCAAGAATTATAATTGTCATTGAGATGGATTTGATTATGGAAAAATGTGATATCCTTGGCGAACCGGTAGCAGCGCCAAGATTGGCGAGTGGAACAATGAATGCAAACCCCCAATCATCTTCTGGCATTCTGAGTGGTGCCCAGGTTAATAAACCAGTTGTTTCGGGGACATCTCTTGAACATCAGAAGACGAATCAGCCTCATGGTGGTTATTATTCTAACAATTCTGGTTCAGAGAGTTTTCCTGCTTCAAACTCTAGATTTAATGCTTCAGCTACTTTAAGCGGGTCTTATAGTGATCAGAAGATGGGTTTTAACAATAACAAGTCAGTTGCTTCACGGCTACCTCCCAATTCGTATGTGCCAGGATATCAAAATTCACCTCCCATGTATATGAATAGAGGCCCCGTTGCTAAAAATGAAGCACCCCCTAGGATTATACCTATAAGTGCTCTGAATCCTTACCAGGGTAGGTGGACGATCAAGGCTAGAGTAACGGCAAAAGGAGAACTTAGGCACTACAATAATCCTCGAGGTGATGGAAAAGTTTTCTCTTTTGATCTTCTTGATTCTGATGGTGGAGAAATTCGGGCAACCTGCTTTAATGCAGTGGCTGATCAGTTTCACAGCCAGATTGAAGCAGGCAAAGTATACTTTATTTCTAAGGGTACTTTAAAACCTGCTCAAAAAAATTTCAACCACCTCTCCAATGACCTAGAAATATTTATGGAGAGCTCATCCACTATACAACCATGCCTTGAGGAGGACAACTCTATTCCTCGACAGCAGTTTCATTTCCGTCCCATTAGTGATGTTGAAGGCTTGGATAATAACATGATAGTTGATGTTATTGGCGTAGTTTCCTCCATAAATCCTTCAACTTCCATAATGAGGAAAAATGGTGTTGAAACTCAAAAGAGGACTCTCCAGTTGAAAGACATTTCTGGTCGAAGTGTTGAATTGACTCTGTGGGGAGCTCTTTGCTCGACAGATGGACAAAGGCTGCAAAACCTGTGTGATTCTGGGGTATTTCCAGTTCTGGCAGTGAAATCTGCTAGAGTAAGTGACTTTAATGGGAAGGCAGTGGGTACTATTTCTACAAGTCAGCTTTTCGTCGAGCCAGAATTTCCTGAGGCACATAGACTGAGAGATTGGTTTGAAAAGGAAGGGAGGAGCACTCCTTCTGTGTCTATCTCCAGGGAAGTGTCTGGTTTGGGTAGGACAGATACACGCAAAACTATTTCACGTATTAAGGATGAGAAGTTGGGGACTTCTGAGAAGCCAGATTGGATCACTGTCAGTGCAACTGTTTCATTCATAAAGGTTGACAACTTCTGCTACACAGCATGCCCAGTCATGATTGGGGACAGACAGTGCAACAAAAAGGTTACCAATAATGGTGACGGGAAATGGAGGTGCGAGAGGTGCGATCAATTGGTTGCAGAATGCGACTACAGGTATATACTGCAGCTTCAAATACAGGACCATACTGGCTTAACATGGGTGACTGCATTTCAAGAAACTGGGGAGGAGATCATGGGCATATCTGCAAAGAATTTGTACTATTTGAAGTATGAAGAGCAGGATGATGAGAAATTTGCAGAAATCATTCGTAAGGTTCTTTTCACAAGTTTCATTTTTAAGTTGAAAGTGAAAGAAGAGACGTATAGTGATGAACAAAGGGTGAAGTCCACCGTAGTGAAAGCAGAAAAGGTAAACTTTTCAGCAGAGTCCAGATATCTATTGGATCTGTTGAATAAACTTAGACTAGAGAGCTCAGATTCTTTTGTCAGTAAGACAGAAAATAATGTCAATAACCCTGGATTTAACCCATCTGGAGTTGGGAGCTTCGGCAATTCACAGCATATCATGGCCCCTCAAGTTGGAAGCTTTGGAGGTAGTGGTTATGGCATTCGGGATGTTGGTGTTAAACCCAACCAATCCAATCAGTATGGGCACCAGTATGATATTTCTAGGGGTCATCCACCTCATTCGCACGTGTACTGCAACAGTTGTGGTGGCACAGGTCACAACTCCATGAACTGTCCAAGTATAATGAATAGTCCAGCAACGGCTCAGTCATCTTTAGGGATGTATCCGAATAGAGCTTCTGGGGGAGTTTCTGGCGGCACTGCTGGTGAATGTTTTAAGTGCCACAGGACTGGGCACTGGGCAAGAGATTGCCCTGGCCTGTCTTCTATTCCCCCAGCTTATGGTAGTGGTGGTGGCTATGCAGCTGTATGA 2664 43.47 MAAPASAIKLTEGAVMVVCKREVTAEEYQPVVQVVDLKLVNTQAHQTSSERYRLLLSDGTHYQQGMLGTQLNEMVKTGRLQKGSVVQLRQYVCNPVQDRLYVYLILPFNFLDSPMFKEMVFSYGKRMGDFYFPESFVFEISRIIIVIEMDLIMEKCDILGEPVAAPRLASGTMNANPQSSSGILSGAQVNKPVVSGTSLEHQKTNQPHGGYYSNNSGSESFPASNSRFNASATLSGSYSDQKMGFNNNKSVASRLPPNSYVPGYQNSPPMYMNRGPVAKNEAPPRIIPISALNPYQGRWTIKARVTAKGELRHYNNPRGDGKVFSFDLLDSDGGEIRATCFNAVADQFHSQIEAGKVYFISKGTLKPAQKNFNHLSNDLEIFMESSSTIQPCLEEDNSIPRQQFHFRPISDVEGLDNNMIVDVIGVVSSINPSTSIMRKNGVETQKRTLQLKDISGRSVELTLWGALCSTDGQRLQNLCDSGVFPVLAVKSARVSDFNGKAVGTISTSQLFVEPEFPEAHRLRDWFEKEGRSTPSVSISREVSGLGRTDTRKTISRIKDEKLGTSEKPDWITVSATVSFIKVDNFCYTACPVMIGDRQCNKKVTNNGDGKWRCERCDQLVAECDYRYILQLQIQDHTGLTWVTAFQETGEEIMGISAKNLYYLKYEEQDDEKFAEIIRKVLFTSFIFKLKVKEETYSDEQRVKSTVVKAEKVNFSAESRYLLDLLNKLRLESSDSFVSKTENNVNNPGFNPSGVGSFGNSQHIMAPQVGSFGGSGYGIRDVGVKPNQSNQYGHQYDISRGHPPHSHVYCNSCGGTGHNSMNCPSIMNSPATAQSSLGMYPNRASGGVSGGTAGECFKCHRTGHWARDCPGLSSIPPAYGSGGGYAAV 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3077096 3080382 + BLOR11272 Blo03g00091 57555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00091 887 SUPERFAMILY Nucleic acid-binding proteins 8 113 IPR012340 -
Blo03g00091 887 Pfam OB-fold nucleic acid binding domain 299 381 IPR004365 GO:0003676
Blo03g00091 887 Gene3D - 285 394 IPR012340 -
Blo03g00091 887 Pfam Replication factor-A C terminal domain 570 721 IPR013955 -
Blo03g00091 887 Pfam Replication protein A OB domain 409 512 IPR031657 -
Blo03g00091 887 PANTHER REPLICATION FACTOR A 1, RFA1 7 764 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Blo03g00091 887 MobiDBLite consensus disorder prediction 194 224 - -
Blo03g00091 887 ProSiteProfiles Zinc finger CCHC-type profile. 855 869 IPR001878 GO:0003676|GO:0008270
Blo03g00091 887 CDD RPA1_DBD_C 554 720 IPR013955 -
Blo03g00091 887 MobiDBLite consensus disorder prediction 245 266 - -
Blo03g00091 887 SUPERFAMILY Nucleic acid-binding proteins 404 532 IPR012340 -
Blo03g00091 887 CDD RPA1_DBD_A 288 391 - -
Blo03g00091 887 Gene3D - 536 728 IPR012340 -
Blo03g00091 887 Gene3D - 8 165 IPR012340 -
Blo03g00091 887 Gene3D - 805 873 - -
Blo03g00091 887 Pfam Replication factor-A protein 1, N-terminal domain 10 106 IPR007199 GO:0003677|GO:0005634|GO:0006260
Blo03g00091 887 Gene3D - 397 535 IPR012340 -
Blo03g00091 887 PANTHER REPLICATION PROTEIN A SUBUNIT 7 764 - -
Blo03g00091 887 SUPERFAMILY Nucleic acid-binding proteins 285 398 IPR012340 -
Blo03g00091 887 SUPERFAMILY Nucleic acid-binding proteins 550 728 IPR012340 -
Blo03g00091 887 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 252 727 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Blo03g00091 887 SMART c2hcfinal6 808 824 IPR001878 GO:0003676|GO:0008270
Blo03g00091 887 SMART c2hcfinal6 854 870 IPR001878 GO:0003676|GO:0008270
Blo03g00091 887 MobiDBLite consensus disorder prediction 245 267 - -
Blo03g00091 887 CDD RPA1N 13 105 IPR007199 GO:0003677|GO:0005634|GO:0006260
Blo03g00091 887 SUPERFAMILY Retrovirus zinc finger-like domains 846 873 IPR036875 GO:0003676|GO:0008270
Blo03g00091 887 Pfam Zinc knuckle 854 869 IPR001878 GO:0003676|GO:0008270
Blo03g00091 887 CDD RPA1_DBD_B 420 527 - -
Blo03g00091 887 ProSiteProfiles Zinc finger CCHC-type profile. 809 824 IPR001878 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00091 K07466 RFA1, RPA1, rpa; replication factor A1 - csv:101211358 1142.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00091 Blo-Chr3:3077096 Blo16g00969 Blo-Chr16:37955158 0 dispersed
Blo03g00091 Blo-Chr3:3077096 Blo06g01214 Blo-Chr6:35741905 9.42E-91 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo03g00974 . 145 882 Core DNA Replication Machinery Family AT4G14700 65.6 2.2e-283 971.8
Blo03g00975 . 123 719 Core DNA Replication Machinery Family AT4G14700 57.4 7.9e-217 750.7
Blo03g00974 . 80 882 Core DNA Replication Machinery Family AT4G12620 62.7 2.4e-290 995.0
Blo03g00975 . 123 719 Core DNA Replication Machinery Family AT4G12620 58.0 1.3e-222 770.0
Blo17g00848 . 206 531 Core DNA Replication Machinery Family AT2G37560 62.7 2.8e-123 438.7
Blo01g00744 . 1 408 Core DNA Replication Machinery Family AT2G01120 54.3 5.0e-122 434.9
Blo01g00205 . 3 527 Core DNA Replication Machinery Family AT4G29910 57.7 5.4e-172 601.3
Blo10g00449 . 1 264 Core DNA Replication Machinery Family AT1G26840 69.3 1.7e-94 342.8
Blo01g00424 . 452 676 Core DNA Replication Machinery Family AT1G26840 68.4 1.0e-78 290.4
Blo15g00779 . 1 814 Core DNA Replication Machinery Family AT1G79150 56.2 1.5e-234 809.7
Blo15g00681 . 1 539 Core DNA Replication Machinery Family AT1G79150 52.1 8.0e-132 468.4
Blo03g01396 . 1 921 Core DNA Replication Machinery Family AT1G44900 75.6 0.0e+00 1335.5
Blo14g00834 . 48 628 Core DNA Replication Machinery Family AT5G46280 78.8 2.6e-259 891.3
Blo10g00430 . 22 836 Core DNA Replication Machinery Family AT2G16440 72.0 0.0e+00 1130.5
Blo01g00598 . 1 709 Core DNA Replication Machinery Family AT2G07690 76.8 6.9e-313 1069.7
Blo08g00626 . 137 962 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1152.9
Blo06g00534 . 15 719 Core DNA Replication Machinery Family AT4G02060 84.8 0.0e+00 1204.9
Blo14g00089 BCT 25 548 Core DNA Replication Machinery Family AT2G29680 53.7 4.7e-143 505.0
Blo13g01051 BCT 26 524 Core DNA Replication Machinery Family AT2G29680 54.0 1.8e-142 503.1
Blo14g00089 BCT 1 518 Core DNA Replication Machinery Family AT1G07270 51.4 4.3e-130 461.8
Blo13g01051 BCT 24 493 Core DNA Replication Machinery Family AT1G07270 52.8 1.1e-128 457.2
Blo15g00359 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.6 2.4e-255 878.2
Blo06g00379 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.1 9.2e-255 876.3
Blo09g00553 . 22 795 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1090.1
Blo04g01396 . 6 361 Core DNA Replication Machinery Family AT2G14050 73.8 1.9e-165 579.7
Blo06g00837 . 1 964 Core DNA Replication Machinery Family AT1G77320 50.5 1.6e-259 892.9
Blo05g00261 . 853 1159 Core DNA Replication Machinery Family AT4G02110 58.1 5.6e-102 369.8
Blo10g00626 . 101 299 Core DNA Replication Machinery Family AT1G80190 70.3 2.5e-79 292.0
Blo02g00887 . 38 182 Core DNA Replication Machinery Family AT3G12530 70.3 1.8e-58 222.2
Blo13g00859 CCT 479 644 Core DNA Replication Machinery Family AT1G19080 65.1 1.4e-60 229.6
Blo13g00859 CCT 479 644 Core DNA Replication Machinery Family AT3G55490 65.1 1.4e-60 229.6
Blo04g01050 . 1 1612 Core DNA Replication Machinery Family AT5G67100 56.9 0.0e+00 1704.5
Blo06g00822 . 130 744 Core DNA Replication Machinery Family AT1G67630 55.8 1.0e-195 680.2
Blo01g00167 . 1 435 Core DNA Replication Machinery Family AT1G67320 64.3 1.7e-182 636.0
Blo05g00533 . 4 861 Core DNA Replication Machinery Family AT5G63960 75.7 0.0e+00 1338.9
Blo07g01274 . 71 477 Core DNA Replication Machinery Family AT2G42120 68.8 1.4e-170 596.3
Blo01g00167 . 1 435 Core DNA Replication Machinery Family AT1G67320 64.3 1.7e-182 636.0
Blo14g00223 . 3 2123 Core DNA Replication Machinery Family AT1G08260 68.5 0.0e+00 2870.5
Blo14g00223 . 9 2238 Core DNA Replication Machinery Family AT2G27120 65.4 0.0e+00 2850.5
Blo15g00024 . 19 464 Core DNA Replication Machinery Family AT5G22110 69.5 1.2e-178 623.2
Blo08g00066 . 388 1290 Core DNA Replication Machinery Family AT5G22010 66.4 4.3e-304 1040.8
Blo02g01098 . 3 355 Core DNA Replication Machinery Family AT1G63160 83.9 3.1e-167 584.7
Blo11g00085 . 1 339 Core DNA Replication Machinery Family AT5G27740 79.4 2.7e-153 538.5
Blo12g01123 . 26 352 Core DNA Replication Machinery Family AT1G21690 79.6 9.7e-145 510.0
Blo18g00180 . 1 362 Core DNA Replication Machinery Family AT1G77470 78.1 2.9e-158 555.1
Blo16g00969 . 26 615 Core DNA Replication Machinery Family AT2G06510 68.9 1.5e-247 852.4
Blo03g00091 . 34 725 Core DNA Replication Machinery Family AT2G06510 50.5 1.3e-198 689.9
Blo06g01214 . 1 625 Core DNA Replication Machinery Family AT5G08020 67.1 1.3e-243 839.3
Blo15g00339 . 1 634 Core DNA Replication Machinery Family AT5G08020 65.7 8.5e-240 826.6
Blo06g01214 . 1 619 Core DNA Replication Machinery Family AT5G61000 66.3 1.4e-240 829.3
Blo15g00339 . 1 628 Core DNA Replication Machinery Family AT5G61000 65.8 5.2e-240 827.4
Blo03g00091 . 8 853 Core DNA Replication Machinery Family AT4G19130 51.3 4.1e-226 781.6
Blo18g00682 . 169 531 Core DNA Replication Machinery Family AT5G26680 84.0 1.0e-175 613.2
Blo13g00680 . 255 540 Core DNA Replication Machinery Family AT2G25100 68.5 3.4e-111 398.3
Blo08g00019 . 2 784 Core DNA Replication Machinery Family AT1G08130 67.2 3.6e-291 997.7
Blo08g00019 . 160 784 Core DNA Replication Machinery Family AT1G49250 65.5 3.7e-233 804.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008728 0 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00091 Blo_Chr03 FPKM 13.358721 15.245317 7.066784 8.143185 9.801329 10.024508 10.967693 20.184626 22.118486 22.308126