Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00106 ATGGTGTTGTGGGAGATCGCAGTGGCGACGGCCTATTTTTTGGGTCTGAAGCGAACGTACAGGTTGGCTCTTAAGCTTCAACGTCGACTCGGTATTGATTTGATCCCGATAAGTACGCATGATAAATGTGATGTGTTGATAATACGAGTTTTGCTTGGTATTGTCTTGAGGTTTGGAGGAGAAAAAGGCTGGATATGTCGAACTCGTTCTATATTTGACATGGCCGTTAAAGTTCACCAAAACATACAAGAAAGAGATATAGAAGTTGGCCGAAACGTCGGCAACTGGATTCTAAGATGGCTTGACAAAATGAAGCCATCGGCTCAGATTCGTGGACCTCTAGCCACAAAAAGCACCAATAGTGATGGCACAAGCAGGAACACCATAAAGCAAATCCAAAGTTCCTCCTTCCCCAAGCTTCCTGAAAATTCTCAGCCGTTAAAGGATCAGAAATCTTCGAGACGTTTATTCATGTCATCGCCAAATATATTGCCCAAGCCCTTTCCCACCATTGCCATGATGCTGAGAGCTTCAAACCCGGTCGGAAATATGACTCAATACCGGAATTTTTCCAGCTCAGAAAAAGTAAGATCGAACTACTTAAGAGGGAGAACTTTTTCCGGGAAATTTTTCGCTTTGTTTTTTCTCGGAAAAGTTGCCGTTTTCCAAGATATGAGTTTTCAAGATATTGAGGCGGGTCGGCCCTTTGCTTATTCGAGGCGGGACGCAATCAATGGCAAGCAGGATCCAACACAGGCCGTCGCTTCTGGTATATTTCAGATCAACACCGCTGTCGCCACCTTTCAGAGGCTCGTCAATACTCTAGGAACTCCGAAGGATACCTCCGAGCTCCGAGAGAAGCTGCATAAGACGAGGCTTCATATTGGACAGTTGGTGAAAGATACTTCTGCAAGACTAAAACACGCTAGTGAAATAGATCATCAAACTGAAGTTAAAGCCAGCAAGAAAATTGCAGATGCAAAGCTCGCTAAAGACTTTCAAGCCGTGCTGAAAGAATTTCAGAAGGCTCAACGACTTGCAGCCGAGAGAGAAACTGCATATACTCCTTTTGTTCCAAAAGCAGTTCTCCCTTCTAGCTACAAGGCCAGCGAGATCGATGTACAATCAGATAAGAATCCTGAACAGCGTGCACTCCTTGTTGAATCTAGGAGACAGGAAGTATTGCTTTTGGACAACGAAATTTCCTTTAACGAGGCGATAATCGAGGAAAGAGAGCAAGGGATCGAAGAAATACAACAGCAAATCGGGGAAGTGAACGAGATTTTCAAAGATTTAGCTGTTCTGGTCCATGAGCAGGGAGGCATGATTGGTAAACGATATTGGATCCAACATCGAGAGTTCCCACGCTGCAACTTCGCAAGCAACTTCCCAACTCGTGAAAGCCTCAAAGACCCAAAGATCAAATTCGTCGCTGTCCTGCTTGCTGTTGGTGATCTTTGGAATATTGCTTCTCATTGTCATCATACTCGTGGCTGCTTGATGGTGGGGGGATTTGCTTCTTGTCCGACAGCCTTTTATGCGGCCGTGAGCTTGATGCCATCGGCGGGTGGCCATTCCTCTTTTTCGCTCTTAAATATGTGA 1602 45.13 MVLWEIAVATAYFLGLKRTYRLALKLQRRLGIDLIPISTHDKCDVLIIRVLLGIVLRFGGEKGWICRTRSIFDMAVKVHQNIQERDIEVGRNVGNWILRWLDKMKPSAQIRGPLATKSTNSDGTSRNTIKQIQSSSFPKLPENSQPLKDQKSSRRLFMSSPNILPKPFPTIAMMLRASNPVGNMTQYRNFSSSEKVRSNYLRGRTFSGKFFALFFLGKVAVFQDMSFQDIEAGRPFAYSRRDAINGKQDPTQAVASGIFQINTAVATFQRLVNTLGTPKDTSELREKLHKTRLHIGQLVKDTSARLKHASEIDHQTEVKASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPKAVLPSSYKASEIDVQSDKNPEQRALLVESRRQEVLLLDNEISFNEAIIEEREQGIEEIQQQIGEVNEIFKDLAVLVHEQGGMIGKRYWIQHREFPRCNFASNFPTRESLKDPKIKFVAVLLAVGDLWNIASHCHHTRGCLMVGGFASCPTAFYAAVSLMPSAGGHSSFSLLNM 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3337321 3345305 + BLOR11287 Blo03g00106 57570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00106 533 SUPERFAMILY t-snare proteins 248 440 IPR010989 GO:0016020|GO:0016192
Blo03g00106 533 PANTHER SYNTAXIN OF PLANTS PROTEIN 231 444 - -
Blo03g00106 533 Pfam Syntaxin-like protein 255 354 IPR006011 GO:0016020
Blo03g00106 533 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 405 445 IPR000727 -
Blo03g00106 533 SMART SynN_4 240 352 IPR006011 GO:0016020
Blo03g00106 533 PANTHER SYNTAXIN 231 444 IPR045242 -
Blo03g00106 533 MobiDBLite consensus disorder prediction 112 153 - -
Blo03g00106 533 Gene3D - 406 445 - -
Blo03g00106 533 MobiDBLite consensus disorder prediction 111 153 - -
Blo03g00106 533 CDD SNARE_Qa 408 443 - -
Blo03g00106 533 Gene3D - 244 358 - -
Blo03g00106 533 CDD SynN 248 382 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00106 Blo-Chr3:3337321 Blo18g00562 Blo-Chr18:7935770 3.21E-68 dispersed
Blo02g00982 Blo-Chr2:37993441 Blo03g00106 Blo-Chr3:3337321 7.11E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00106 - K08488 bhj:120089793 353.599