Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00110 ATGGTTTGCACCGCCAGTGATTTACAGGGGTGGAAAGACTTTCCGAAAGGCCTCCGAGTTCTTCTCCTCGACAGCCAGATTGATTCTGCAAATGAAATAAGATCCAAGCTTGAAGAAATGGAGTATATTGTTTATACGTATCAAGACGAGAATGAAGCTCTCTCGGCAATCGCAAGCAAAAACGAAACCTTTCATGTTGCCATCGTAGAGGTGAGTGCTAGTAATTGTGAAGGAAGTTTCAAGTTTTTAGAGTCTGCAAAGGACTTGCCAACTGTTATGACTTCTAATTTCGATTGCCTAAATACGACGATGAAGTGCATAGCTCTCGGCGCAGTTGAGTTTCTACGTAAACCACTTTCCGAGGACAAACTTAGGAACATTTGGCAGCATGTTCTTCACAAGGATAACTCATACAACTTCTCTTATCCAAAAAAAAAATCTGATCTTTCAATCGTCGATTGGACTTCTGAGCTACACAAAAAGTTTGTGAAGGCAGTTGATCAATTAGGCATTGATCAAGCGATTCCTTCACGAATACTTGAACTAATGAAAGTCGAAGGTTTGACAAGGCATAACGTTGCAAGCCATCTCCAGAAGTATCGGATGCAAAGGAGACAAATCTTACCGAAAGAAGAAGATACAGGATGGACAAATACAAAAGATTCGATGAGGAGGACTTGCAGTTACTATCCGCAAAGGCCTATAATGGCCTTTCCGCCGTATTATACTTACAATTACAATTACGATCCACAGAAACTCACGAGCCCAGTGTATCCGACCTGGGGACAAATTGGAGCTCATCGAGGGGGAGTTCATCTGTGGACCCCGCCTCCGTATCATCCTCATTGGCCAACTCTCGATGCTTGGGATTGGCGGACTTCGCCAGAGCGCACAGATTTAGAGCCCAGGGCATCCGGCCGCCATGGAGCGGAGCTGATACGAGCCGATGCGTGGGGTTGCCCCGTAATGCCGCCCCCTCATAGTGCTTATTCTACTTATTCTCAAAACATTTCAAGTTACCAAGACTCCCGCGCCGTCGAGAATGGCTTTGCCATGACACATACATCCGTCAACCTTCAACCGATTCTACACTATTTCATTGCACATCATCGAGCGCGATTGTTAACGATATCGATGCTGGTAGTTGTGTTGGTCGGGTTGATGAACCGAACTGAGAAGTGGGCTGAGGAGGTAATAGACAAGGTTGTGAAAGAAGCAATGAGCAAGCCATGGCTACCTCTTCCTTTGGGGCTTAAACCTCCTTCAACTGAGAGTGTTTTGACTGAGCTCTCCAGGCAAGGCATCTCCACCGTCCCTTCTCACATCACCGGCTATAGTCCACGCTGA 1347 46.1 MVCTASDLQGWKDFPKGLRVLLLDSQIDSANEIRSKLEEMEYIVYTYQDENEALSAIASKNETFHVAIVEVSASNCEGSFKFLESAKDLPTVMTSNFDCLNTTMKCIALGAVEFLRKPLSEDKLRNIWQHVLHKDNSYNFSYPKKKSDLSIVDWTSELHKKFVKAVDQLGIDQAIPSRILELMKVEGLTRHNVASHLQKYRMQRRQILPKEEDTGWTNTKDSMRRTCSYYPQRPIMAFPPYYTYNYNYDPQKLTSPVYPTWGQIGAHRGGVHLWTPPPYHPHWPTLDAWDWRTSPERTDLEPRASGRHGAELIRADAWGCPVMPPPHSAYSTYSQNISSYQDSRAVENGFAMTHTSVNLQPILHYFIAHHRARLLTISMLVVVLVGLMNRTEKWAEEVIDKVVKEAMSKPWLPLPLGLKPPSTESVLTELSRQGISTVPSHITGYSPR 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3439388 3442507 + BLOR11291 Blo03g00110 57574

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00110 448 Gene3D - 18 145 - -
Blo03g00110 448 SUPERFAMILY Homeodomain-like 152 205 IPR009057 -
Blo03g00110 448 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 151 361 - -
Blo03g00110 448 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 393 444 - -
Blo03g00110 448 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 1 137 - -
Blo03g00110 448 Gene3D - 147 207 - -
Blo03g00110 448 PANTHER TRANSCRIPTION ACTIVATOR GLK1 393 444 IPR044825 GO:0003700|GO:0045893
Blo03g00110 448 Pfam Myb-like DNA-binding domain 153 201 IPR001005 -
Blo03g00110 448 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 137 IPR044825 GO:0003700|GO:0045893
Blo03g00110 448 PANTHER TRANSCRIPTION ACTIVATOR GLK1 151 361 IPR044825 GO:0003700|GO:0045893
Blo03g00110 448 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 152 203 IPR006447 GO:0003677
Blo03g00110 448 SUPERFAMILY CheY-like 16 134 IPR011006 -
Blo03g00110 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 146 205 IPR017930 -
Blo03g00110 448 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00110 - - - oeu:111389902 339.347
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00126 Blo-Chr2:1060752 Blo03g00110 Blo-Chr3:3439388 7.34E-22 dispersed
Blo03g00110 Blo-Chr3:3439388 Blo08g00530 Blo-Chr8:15145143 8.68E-30 dispersed
Blo03g00110 Blo-Chr3:3439388 Blo07g00160 Blo-Chr7:2078173 6.93E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g607 . Blo03g00110 . . . Bpe07g00227 . . . Cmo16g01131 . . . . . Cpe14g00895 Cpe05g00201 . . . . . . . Cla10g00185 Cam10g0191 Cec10g0196 Cco10g0198 Clacu10g0195 Cmu10g1040 Cre10g0445 . . . . . . . . . . . . . . . Bma12g00227 . . . . Cma16g01084 . . . . . . . . . . . . . . . . . . . . Chy06g02116 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001240 1 4 1 2 1 2 1 2 2 2 2 2 8 2 2 8 2 2 5 2 3 2 2 2 2 2 2 2 6 1 77
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12083 PF00249 Myb_DNA-binding 3.40E-07 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00110 Blo_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0