Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00119 ATGGGGAAAGGCAAACGAGATGCCCGAACCAAAGCTACTGTCGAAGATGCAGCCGTTTCTGCTTCTCCCAGCGTCTTCAAAACCATATTTGGCGAAGTCGCGGAAGGGAATGCTGGTGACTCCATTTTTTCCGACGGTAATCCCTTTCGTAGAAAACTCAAGGAGTCTGAAAGTGCTGTTAATTTCACCGCGAGCCCTGATGTCGGAGAAGTGAAGAAGAGGAAGAGAGATAAAGAGACGAAGAATGAGAGTTTTTTCGATTCTGTTGATGTAGCTGTTGAGACCCCGTTGCAGCTTGATAAAATTAGGAAGAAGAAATTGCGTATTCCTGATTCTGTTGACAATAAACCTGAAGGTGGAAGAAAGGAAGTAGCGAATAAAGAAATGGTGATGCACAAGGGAAAGAGAAAGAGAGAGGAGCTCGAGAAGGACTATGAAGCGAGGAAGTATGGTGTAGTGGAAGAAGCTGAGAAAATTGTAGGTGGGAAAATTGTGGGTGAGAAGAGGAAAGTAGTTGACAATCCTGCTGATCTGCTGATTTCTAAGGAAGGCTTTGATGATGAAGACAAGCTTTTGAGAACGGTGTTTGTCGGTAATTTGCCATTGAAGGTGAAGAAGAAAGCTTTGTTGAAGGAATTTAGCCAATTTGGCGAGGTGGAATCTGTGAGGATTCGGTCCGTAGCTGTCACAGATAGCAAACTATCAAAAAAAGGGGCAATCATAACCAAGCAAATCAATGATTCCGTGGACAGTGTACATGCCTACATTGTTTTCAAAACAGAGCAGTCGGCACATGCTTCTTTGTCATATAACATGGCTGTGTTTGCAGGAAATCATATCCGTGTAGACAGGGCATGCCCACCTCGAAAGAAGCTGAAAAGTGAGAATGCTCCAATCTATGATCACAAAAGAACTGTTTTTGTAGGTAACCTTCCATTTGATGCGAAGGATGAAGAATTGTATCAGCTGTTTTGTGGAATCGACACTGTTGGATCCAGCACTGAAGCTGTCCGAGTAATTAGAGATTCTCATACAAATATCGGAAAAGGCTTTGCATACGTTTTATTTAAAACAAGGCAAGCAGCTAGTATGATTGCTAAAAGGCGGAACTTAAAGTTAAGAGAGCGAGACCTGAGGCTCTTTCATGCCAAGCCTAATTTGACTCCATCCAAGGGACAGAAGGAATCAGTTTCACCGGATGGTGCTTCCCCAGCAAAGTTAGCCAGGATAGACAGCGGCAGGGTTGAAAAGAAAAAAACACCCTTGTCTTATCAGGGCTTACGGGCCAGCAAATCTGGTGTTCAAAAAAAGATTAGCATGAAAAAGGCGGTGCCTGAGAAATTAAAATCGAAGTCGAAGACAGAGAAGCCGGTAGTGCTGAAGGGGAAAAGACCAGCTGTTGCAGTCAGGAAGGCCAAAGCAAATGCAATGAAGGAAGGCCTTGTGTTAAACTCAAAACCAAGTGAGATGAAGCGGAAATTAGACAGCCGAACCCCAGAGAGTTCTCGACCCAATAAGAAAGCGAAGAAATTTAGGTAA 1539 43.66 MGKGKRDARTKATVEDAAVSASPSVFKTIFGEVAEGNAGDSIFSDGNPFRRKLKESESAVNFTASPDVGEVKKRKRDKETKNESFFDSVDVAVETPLQLDKIRKKKLRIPDSVDNKPEGGRKEVANKEMVMHKGKRKREELEKDYEARKYGVVEEAEKIVGGKIVGEKRKVVDNPADLLISKEGFDDEDKLLRTVFVGNLPLKVKKKALLKEFSQFGEVESVRIRSVAVTDSKLSKKGAIITKQINDSVDSVHAYIVFKTEQSAHASLSYNMAVFAGNHIRVDRACPPRKKLKSENAPIYDHKRTVFVGNLPFDAKDEELYQLFCGIDTVGSSTEAVRVIRDSHTNIGKGFAYVLFKTRQAASMIAKRRNLKLRERDLRLFHAKPNLTPSKGQKESVSPDGASPAKLARIDSGRVEKKKTPLSYQGLRASKSGVQKKISMKKAVPEKLKSKSKTEKPVVLKGKRPAVAVRKAKANAMKEGLVLNSKPSEMKRKLDSRTPESSRPNKKAKKFR 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3547650 3551292 - BLOR11300 Blo03g00119 57583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00119 512 CDD RRM2_RBM34 305 381 IPR034221 -
Blo03g00119 512 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 385 IPR000504 GO:0003723
Blo03g00119 512 PANTHER RNA-BINDING PROTEIN 34 44 511 - -
Blo03g00119 512 MobiDBLite consensus disorder prediction 383 466 - -
Blo03g00119 512 MobiDBLite consensus disorder prediction 59 79 - -
Blo03g00119 512 MobiDBLite consensus disorder prediction 440 460 - -
Blo03g00119 512 MobiDBLite consensus disorder prediction 478 512 - -
Blo03g00119 512 SUPERFAMILY RNA-binding domain, RBD 299 392 IPR035979 GO:0003676
Blo03g00119 512 MobiDBLite consensus disorder prediction 485 506 - -
Blo03g00119 512 Gene3D - 293 401 IPR012677 -
Blo03g00119 512 SMART rrm1_1 305 381 IPR000504 GO:0003723
Blo03g00119 512 SMART rrm1_1 194 283 IPR000504 GO:0003723
Blo03g00119 512 Gene3D - 189 292 IPR012677 -
Blo03g00119 512 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 44 511 - -
Blo03g00119 512 CDD RRM1_RBM34 193 283 IPR034220 -
Blo03g00119 512 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 367 IPR000504 GO:0003723
Blo03g00119 512 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 229 IPR000504 GO:0003723
Blo03g00119 512 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 287 IPR000504 GO:0003723
Blo03g00119 512 SUPERFAMILY RNA-binding domain, RBD 186 294 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00119 K14837 NOP12; nucleolar protein 12 - zju:107430535 513.457
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00119 Blo-Chr3:3547650 Blo01g00276 Blo-Chr1:3491730 9.10E-08 dispersed
Blo03g00119 Blo-Chr3:3547650 Blo12g00153 Blo-Chr12:10466145 1.36E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g690 . Blo03g00119 Bda06g01271 . . Bpe07g00216 . . . . . . . . Sed13g0485 . . Bhi11g00020 Tan01g2206 Cmetu06g0815 . . Mch10g1675 . Cla10g00146 Cam10g0141 Cec10g0151 Cco10g0151 Clacu10g0145 Cmu10g0992 Cre10g0403 Cone8ag0607 . . . Lsi07g01181 . . Cme06g02459 . . . . . . . Bma12g00215 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00155 Chy06g02154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010480 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00119 Blo_Chr03 FPKM 5.169804 4.437136 5.598681 5.686329 8.238941 9.243594 7.533695 6.429344 6.314078 6.177321