Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00121 GGAGACGATGAAGAAGAAAACAAGTGGCCGCCATGGCTGAAACCTCTGCTGAGAGAAAGCTTCTTCGGTCAATGCAAATTACATGTTCATTCTCATAAAAGTGAATGCAATATGTACTGCATGGATTGCATGAACGGCCCTCTTTGCTCTCTCTGCCTCAATTATCACAAGGATCATCACTTTATTCAGATAAGGAGATCATCGTACCACGACGTGATAAGAGTGTCTGAAATTCAAAAAATATTGGACATAACAGGCGTGCAAACATACGTTATAAACAGCGCGAGAGTCGTGTTCTTGAACGAACGGCCGCAGCCGAGGCCCGGCAAGGGCGTCACCAACACCTGCGAGGTCTGCGCCCGCAGCCTTCTTGACTCCTTCCGCTTCTGCTCTCTCGGCTGCAAGATGGTCGGAACTTCAAAAAAATTTGAGAACAAAAAGAAGAAATTGAAGATGATGGCGTTGGAATCAGAAGACTCTTACAGCAGCAGCAGCAGTAGCAGTAATAATAGCAGCATTCGCTACGGGTATAAGAGTGGCCGCCGCCACCACAACAGCGACAAAGGCCAGAGCTTCACTCCCTCGACACCACCCCCAACTTCTCTTAATTATAGAACAGCCAAACGAAGAAAGGGAATTCCACACCGAGCCCCTACAGGAGGACTAACTATACAATAT 678 47.35 GDDEEENKWPPWLKPLLRESFFGQCKLHVHSHKSECNMYCMDCMNGPLCSLCLNYHKDHHFIQIRRSSYHDVIRVSEIQKILDITGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCARSLLDSFRFCSLGCKMVGTSKKFENKKKKLKMMALESEDSYSSSSSSSNNSSIRYGYKSGRRHHNSDKGQSFTPSTPPPTSLNYRTAKRRKGIPHRAPTGGLTIQY 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3619187 3620886 - BLOR11302 Blo03g00121 57585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00121 226 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 2 221 - -
Blo03g00121 226 MobiDBLite consensus disorder prediction 157 176 - -
Blo03g00121 226 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 2 221 - -
Blo03g00121 226 MobiDBLite consensus disorder prediction 156 226 - -
Blo03g00121 226 MobiDBLite consensus disorder prediction 189 203 - -
Blo03g00121 226 Pfam PLATZ transcription factor 65 136 IPR006734 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00121 - - - csv:101210628 335.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00121 Blo-Chr3:3619187 Blo19g00191 Blo-Chr19:8580144 2.07E-119 dispersed
Blo02g00989 Blo-Chr2:38312988 Blo03g00121 Blo-Chr3:3619187 1.81E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g630 . Blo03g00121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0450 Cone12ag0440 . . . . Chy04g00051 . . . . . . . . . . . . . . . . . . . . . . . . . Cla09g01175 Cam09g1240 Cec09g1256 Cco09g1286 . . Cre09g1204 . Csa03g04649 . Cme04g00065
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000618 6 3 4 3 4 3 6 3 3 3 3 3 4 3 3 5 3 4 6 3 3 2 3 2 3 2 3 4 4 2 103
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12086 PF04640 PLATZ 5.30E-30 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00121 Blo_Chr03 FPKM 14.101988 13.345165 15.668815 16.220549 13.677564 13.934505 13.835675 17.390781 17.247379 18.063526
Blo03g00121 Blo_Chr11 FPKM 14.81989 16.501833 30.249414 28.200832 21.830891 19.708765 22.634018 23.358749 21.782116 27.47298