Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00161 ATGAATAAGTCGAAGGAAATTTATGAGGATATAATTATATTTAGAGGCAGTGGTCAAGGTGAAGAGGATTCAAGCTCGAGAAAATCTAAAGTTACTGCTGGGAGGACTAAATCTATTCTTCCTCCCATTGAAACCTACTGGCACCTTCCACATATAGAGGAGAAGCCATCACCTATTCTAGGCTTCAAGCAAATGTTATCTAATCCGCTTAAATTTAGAGGGTCATTCAAGAAGTTTAGAAAGAGCAAAAGCTTAAAGGTAATACTTGAAGGAGCTCGTGATCCAAATGACAAAAATATTGTTTCTGCTTTCCGTAATTTGCTCCTTAGCACGGGCCATTTGCCAGAAAAGCACGACAATTATCATACTCTTCTAAGATTTCTAAGAGTGAGGAATTTTGATCTTGCTAAAGCAAAAGAAATGTTCTTGAATTTTCTCAAATGGCGTGAGGATTTTCGCACGGATGCAATTTCAAAGGAATTGAAGTTCGAGGAATATGCAGAGGTGAAAAAATGTTATCCTCATGGATATCATGGGGTAGACAAATATGGTCGACCAATATATATTGAGCGGATTGGGATGGTTGACCTCCATGCGTTATTGCAAATAACAACAATTGAGAGGTTTGTTAAATATCACGTATCGGAACAAGAGAAGACCTTAAATGTGAGGTATCCCTCATGCTCACTTGCAGCTAAGAGGCACATAGCTTCCACCACCAGTATTTTGGATGTCCATGGAGTGGGAATGGCCAACTTCTCCAAGCCTGCAAGACATTTATTCACAGAAATTCAGAAGATTGATAGTAATTACTACCCAGAGAGTTTAAATCGACTCTTTATCATCAATGTGGGGCCGGGGTTTAAAGTTTTGTGGAAAGCTCTAAGGGCATTTCTTGATGCTCGAACATTAGCAAAAATTCATGTGCTGGGACATGACTATCTCAAAGATCTTCTCGAAGTGATTGATCCAGGTAATTTACCAACGTATTTCGGGGGAAACTGCACATGTTCAGACTACGGGGGCTGCCTGGTCAGTGACAGAGGACCGTGGCATGATCCAGAAATACTGGAAATTCTCGAGGCAGTATCATTTAAAGACGACTCTTTCGATGATGGAGAAGATGATGGCTCGGCATTGGACGAGTCTTGGAGTTTTAACAATGTGAAAACTACAAATCCAAAAAAGTACTGTGTTCGCCCGAATACTGGAATCGTCTTGCCCCGGTCCACATGTGACGTAATAGTTACCATGCAAGCACAAAGGGAGGCTCCTCCAGACATGCAGTGCAAGGATAAGTTCCTCCTTCAGAGTGTGAAAGCAAGTGATGGTACTACCCCTAAGGATATTACCGCCGAAATATTTAACAAGGCAGCAGGGAATGTCGTAGAGGAATGCAAATTGAGAGTTGTGTATGTTTCTCCTCCTCAGCCACCATCTCCTGTAACGGAAGGGTCGGAAGAAGGTTCGCCCCCAAGAGATTCTGTTTTAGAAGATGGAAATGTGAGTGGTGCTAAGTCAAATGATTCTATTGTTGCAGCATTCGTTGAGCAGATCGATGGTCAGGAAAAATCTGCTGAGGTGAAGGCTCTTGTTGCAAAATTGACAAACGAAAAGAAAAATGTCATTCAGCAGAATAACAAGCTTCGCCAAGAATTGGAGCTATTGAGGCGCGAAGGCAACAAAAATCATGGTGGTGTTTCCTTCCTTCTTGTCATTTTTGTTGGCATAATTGGCATCATCTTTGGCTATCTGGTGAAGAGAACATAA 1770 41.58 MNKSKEIYEDIIIFRGSGQGEEDSSSRKSKVTAGRTKSILPPIETYWHLPHIEEKPSPILGFKQMLSNPLKFRGSFKKFRKSKSLKVILEGARDPNDKNIVSAFRNLLLSTGHLPEKHDNYHTLLRFLRVRNFDLAKAKEMFLNFLKWREDFRTDAISKELKFEEYAEVKKCYPHGYHGVDKYGRPIYIERIGMVDLHALLQITTIERFVKYHVSEQEKTLNVRYPSCSLAAKRHIASTTSILDVHGVGMANFSKPARHLFTEIQKIDSNYYPESLNRLFIINVGPGFKVLWKALRAFLDARTLAKIHVLGHDYLKDLLEVIDPGNLPTYFGGNCTCSDYGGCLVSDRGPWHDPEILEILEAVSFKDDSFDDGEDDGSALDESWSFNNVKTTNPKKYCVRPNTGIVLPRSTCDVIVTMQAQREAPPDMQCKDKFLLQSVKASDGTTPKDITAEIFNKAAGNVVEECKLRVVYVSPPQPPSPVTEGSEEGSPPRDSVLEDGNVSGAKSNDSIVAAFVEQIDGQEKSAEVKALVAKLTNEKKNVIQQNNKLRQELELLRREGNKNHGGVSFLLVIFVGIIGIIFGYLVKRT 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4170932 4178688 + BLOR11342 Blo03g00161 57625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00161 589 Gene3D Immunoglobulins 364 477 IPR013783 -
Blo03g00161 589 Gene3D - 154 363 IPR036865 -
Blo03g00161 589 Pfam MSP (Major sperm protein) domain 389 458 IPR000535 -
Blo03g00161 589 SUPERFAMILY PapD-like 389 488 IPR008962 -
Blo03g00161 589 SMART sec14_4 165 336 IPR001251 -
Blo03g00161 589 Coils Coil 532 559 - -
Blo03g00161 589 CDD SEC14 163 334 IPR001251 -
Blo03g00161 589 SMART CRAL_TRIO_N_2 120 145 IPR011074 -
Blo03g00161 589 ProSiteProfiles Major sperm protein (MSP) domain profile. 319 473 IPR000535 -
Blo03g00161 589 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 32 396 - -
Blo03g00161 589 MobiDBLite consensus disorder prediction 474 501 - -
Blo03g00161 589 SUPERFAMILY CRAL/TRIO N-terminal domain 94 159 IPR036273 -
Blo03g00161 589 Pfam CRAL/TRIO domain 173 333 IPR001251 -
Blo03g00161 589 Gene3D - 75 152 - -
Blo03g00161 589 PRINTS Cellular retinaldehyde-binding protein signature 325 334 - -
Blo03g00161 589 PRINTS Cellular retinaldehyde-binding protein signature 123 145 - -
Blo03g00161 589 PRINTS Cellular retinaldehyde-binding protein signature 292 311 - -
Blo03g00161 589 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH11 32 396 - -
Blo03g00161 589 SUPERFAMILY CRAL/TRIO domain 164 358 IPR036865 -
Blo03g00161 589 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 165 339 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00161 - - - jre:108985339 536.954
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo03g00161 Blo03g00417 CCT
Blo02g01044 Blo03g00161 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01044 Blo-Chr2:40352725 Blo03g00161 Blo-Chr3:4170932 1.70E-91 dispersed
Blo03g00161 Blo-Chr3:4170932 Blo04g00520 Blo-Chr4:4454564 4.26E-112 dispersed
Blo07g00057 Blo-Chr7:832845 Blo03g00161 Blo-Chr3:4170932 2.49E-51 dispersed
Blo10g00338 Blo-Chr10:5076018 Blo03g00161 Blo-Chr3:4170932 5.61E-24 dispersed
Blo11g00165 Blo-Chr11:1289313 Blo03g00161 Blo-Chr3:4170932 3.46E-20 dispersed
Blo11g00478 Blo-Chr11:4345692 Blo03g00161 Blo-Chr3:4170932 4.26E-23 dispersed
Blo12g00170 Blo-Chr12:10986339 Blo03g00161 Blo-Chr3:4170932 5.03E-31 dispersed
Blo18g00592 Blo-Chr18:9053054 Blo03g00161 Blo-Chr3:4170932 6.74E-22 dispersed
Blo14g00127 Blo-Chr14:917013 Blo03g00161 Blo-Chr3:4170932 1.90E-07 transposed
Blo02g01043 Blo-Chr2:40323977 Blo03g00161 Blo-Chr3:4170932 0 wgd
Blo03g00161 Blo-Chr3:4170932 Blo03g00417 Blo-Chr3:12209786 4.90E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g534 Blo02g01044 Blo03g00161 Bda06g00029 Bda08g00576 Bpe05g00582 Bpe07g00176 . . . Cmo16g01161 . Cma15g01125 . Car15g01030 Sed04g1666 Cpe14g00917 . Bhi11g00073 Tan01g2092 Cmetu06g0529 . . Mch10g1587 . . . . . . . . . . . . . Csa05g00419 Chy09g01090 . Blo03g00417 . Bda07g00001 . . Bpe11g00268 Bma05g00421 Bma12g00643 . . Cmo15g01185 . Cma16g01109 . Car16g01047 . Cpe13g00231 Bhi12g00443 . . Lac11g2281 Hepe06g1669 . Lcy12g0040 Cla01g00395 Cam01g0412 Cec01g0403 Cco01g0424 Clacu01g0413 Cmu01g0394 Cre09g2117 Lsi09g00420 . . Cme09g01619
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009123 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00161 Blo_Chr03 FPKM 13.229003 14.206325 10.32527 10.404474 19.783957 19.027105 18.262596 7.292613 9.073038 6.777527