Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00162 ATGCTGGCGACCCCCGGAACGACAGTTCAGTCTCTCGCCGCCAAGACCGCTTCCCTGGTTTCTCAGGTAGGTGTCAACTCGATTTTCAATTTGAAGTTGGCTATTTCGTTCTTAACTCGTGACGGTTTTTCGTGGAAAGCTTTGGGAGATGTTTTCAATGCTTCTCCTTCGAGGAGTTTGAGCCAAGTGCTGAACCTGATGGATCAGCTCATGGAGGATCCGTTTTTAGCGGCATCTAGAGGCGTCGGAGCCGGAGCGAGGAGAGGCTGGCACGTGAAGGAAGACGACGACGCACTGTATCTGCGTATGGACATGCCCGGTCTCGGAAAAGAAAACATCCAGGTTTCAGTGGAACACAACACTCTGATAATTAAAGGAGAAGAAGAGGAGAAATCAGAGGATGGCGGGGGCGAGAGTCGAAGAAAGTACTCAAGCAGGCTGGACTTGCCTCCTAATCTGTACAAGCTCGACTCCATAAAAGCAGAGATGAAGAACGGAGTTCTGAAAATGGAAGTGCCGAAGGTGAAAGAGGAAGAGAGGAAGAACGTAATGGAAGTGAAGATTGACTGA 570 49.65 MLATPGTTVQSLAAKTASLVSQVGVNSIFNLKLAISFLTRDGFSWKALGDVFNASPSRSLSQVLNLMDQLMEDPFLAASRGVGAGARRGWHVKEDDDALYLRMDMPGLGKENIQVSVEHNTLIIKGEEEEKSEDGGGESRRKYSSRLDLPPNLYKLDSIKAEMKNGVLKMEVPKVKEEERKNVMEVKID 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4180091 4180660 + BLOR11343 Blo03g00162 57626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00162 189 SUPERFAMILY HSP20-like chaperones 60 181 IPR008978 -
Blo03g00162 189 Pfam Hsp20/alpha crystallin family 92 188 IPR002068 -
Blo03g00162 189 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 37 188 IPR044656 -
Blo03g00162 189 Gene3D - 58 189 IPR008978 -
Blo03g00162 189 MobiDBLite consensus disorder prediction 124 145 - -
Blo03g00162 189 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 81 189 IPR002068 -
Blo03g00162 189 CDD ACD_sHsps-like 92 174 - -
Blo03g00162 189 MobiDBLite consensus disorder prediction 124 148 - -
Blo03g00162 189 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 37 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00162 K13993 HSP20; HSP20 family protein - csv:101219106 204.142
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g01045 Blo03g00162 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00162 Blo-Chr3:4180091 Blo06g00817 Blo-Chr6:31411546 4.26E-21 dispersed
Blo07g00709 Blo-Chr7:23376892 Blo03g00162 Blo-Chr3:4180091 1.24E-13 transposed
Blo02g01045 Blo-Chr2:40356938 Blo03g00162 Blo-Chr3:4180091 5.65E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g532 Blo02g01045 Blo03g00162 . . Bpe05g00583 . . . . . . . . . . Cpe14g00946 . Bhi11g00197 . . . . . . Cla10g00259 Cam10g0265 Cec10g0273 Cco10g0271 Clacu10g0267 Cmu10g1110 Cre10g0518 Cone8ag0395 Cone12ag0380 . . . . . Cme06g02575 . . . . . . . Bma12g00642 . . . . Cma16g01142 . Car16g01081 . . . . . . . . . . . . . . . . . Csa03g00278 Chy06g02044 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002899 1 4 2 2 1 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 1 1 1 1 2 1 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00162 Blo_Chr03 FPKM 116.235641 122.389153 106.615784 95.861824 161.333832 162.427887 157.578705 121.272789 135.745377 129.803787