Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00167 ATGGGGGGAAACAGTGTCGTTTCGCGTTCCGTAGCTTCTTCTCTTCGCCTTCGCGCCGGTATGGGGCTTCCGGTCGGCAAACACATCGTGCCCGATAAGCCACTTGCTGTGGATGATGAGTTGACGTGGGACAATGGCACCTCTGTTCCTGAGCCCTGTATTGATCGCATTGCTGACACTATTGTCACTTTCGGTGTGGATTATGTCGTGCAGTACGAAGCCTTAGGTTGGTTATGCGGAGGTTTAAGCTGTTTTGCTGCTCTCGGACTTTTAGCTGTGTGGAATGACAAAGCTTCTAAGATACCATTCGTCACTTCATTGTTCTTCGTGTTCTCCATTCTCATGGCTGTGGCATTGCCGCCAATTCAAGCCTGTGCTCCTTGTTCACAGCCACATCCTCCTGATAAGCCGAAGCACCACCATAAACACCCGAAGAATCCTCATCCAAAGCCGCCACACCATGGCGGCAGTGGCGGAGGAGGTCACGGTGGTGGTGGCGGTTCGCCTCATAATCCACCTATCATAACTCCAACACCCCCGGTAATTTCCCCACCAATCATTTCTCCGCCGGTGTTGCCACCTCCGGTGATTAACCCTCCAGTGACTATCCCGCCGCCTTCTCCCTATCCACCGTACGTCGGAAATCCTCCTGGAAGCGGTGGAGGTGGCATCCCGGGTTTAGTTCCACCGCCATCAACTCCGGTGACTTGTCCGATCGATGCACTGAAATTAGGGCTTTGTGTGGATGTGCTGGGAGGGTTAGTGCACATAGGGTTAGGAAATCCGGTGGAGAACGCTTGTTGTCCTGTTCTTGGAGGGTTACTTGAGCTAGAAGCCGCTGTCTGTCTTTGCACTACCATAAGGCTTAAGCTTCTTAACATCAATATATATATTCCTCTAGCTCTCCAAGCCCTAATCACTTGTGGTAAAACCCCCCCGCCTGGTTTTATCTGCCCTCCCCTCTAG 966 52.28 MGGNSVVSRSVASSLRLRAGMGLPVGKHIVPDKPLAVDDELTWDNGTSVPEPCIDRIADTIVTFGVDYVVQYEALGWLCGGLSCFAALGLLAVWNDKASKIPFVTSLFFVFSILMAVALPPIQACAPCSQPHPPDKPKHHHKHPKNPHPKPPHHGGSGGGGHGGGGGSPHNPPIITPTPPVISPPIISPPVLPPPVINPPVTIPPPSPYPPYVGNPPGSGGGGIPGLVPPPSTPVTCPIDALKLGLCVDVLGGLVHIGLGNPVENACCPVLGGLLELEAAVCLCTTIRLKLLNINIYIPLALQALITCGKTPPPGFICPPL 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4222379 4226127 + BLOR11348 Blo03g00167 57631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00167 321 SMART aai_6 237 318 IPR016140 -
Blo03g00167 321 CDD HPS_like 236 318 IPR027923 -
Blo03g00167 321 MobiDBLite consensus disorder prediction 129 179 - -
Blo03g00167 321 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 104 320 - -
Blo03g00167 321 Gene3D - 235 320 IPR036312 -
Blo03g00167 321 PANTHER - 104 320 - -
Blo03g00167 321 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 239 320 IPR036312 -
Blo03g00167 321 MobiDBLite consensus disorder prediction 135 150 - -
Blo03g00167 321 Pfam Hydrophobic seed protein 236 319 IPR027923 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00167 - - - pmum:103337190 189.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00167 Blo-Chr3:4222379 Blo12g01072 Blo-Chr12:28461745 5.43E-23 dispersed
Blo08g00408 Blo-Chr8:7640237 Blo03g00167 Blo-Chr3:4222379 3.63E-38 transposed
Blo02g01047 Blo-Chr2:40410877 Blo03g00167 Blo-Chr3:4222379 8.61E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g519 . Blo03g00167 Bda06g00033 Bda08g00573 Bpe05g00584 Bpe07g00170 . . Cmo06g00796 Cmo16g01197 . . . . Sed04g1726 Cpe14g00950 . Bhi11g00205 Tan01g2019 Cmetu06g0268 . Hepe06g1139 Mch10g1552 . Cla10g00266 Cam10g0274 Cec10g0282 Cco10g0278 Clacu10g0276 Cmu10g1116 Cre10g0525 . . . . Lsi07g01311 . . Cme06g02584 . . . . . . Bma05g00767 Bma12g00638 . . . Cma06g00776 Cma16g01146 Car06g00690 Car16g01084 Cpe08g00746 . . . . . . . . . . . . . . . . Csa03g00285 Chy06g02038 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005481 2 1 1 4 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 0 1 1 3 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00167 Blo_Chr03 FPKM 6.647491 7.406113 3.93113 3.854123 1.950713 2.744363 2.738472 6.246067 6.233333 6.666994