Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00171 ATGTCTGTCCAAACGATGCCACCCATAACAACACTAATAAACCGCCCCATCATTTCCCGCCACGTGGCTGTCATCGGCGCTGGGGCAGCCGGCCTAGTCGCCGCTCGTGAGCTCCGGCGGGAAGGCCACAGTGTGGTGGTATTCGAGGGATGCGATCAAGTGGGTGGCTCGTGGGTCTACACACCCAAGGTTGACTCCGACCCACTCGGTTCCGATCCTCATCGAACCGTGGTCAACTCTAGCCTCTACCAATCGCTCCGGACCAATTTACCCAGAGAGGTCATGGGTTTTCGCGATTACCCATTTGTGGATCGGAGCGAGGAGAGCGATAGAGATTGCAGAAGGTATCCGGGGCATAGAGAGGTTTTGATGTATTTGAAAGATTTCTCGAGGGATTTCAGAATTTGTGAATTGGTTAGGTTCGAGACGGAGGTGGTGTTTGTTTCTCGAGAAAATAGCGGAAAATGGAAAGTCAGGTCGAGAAACAGAGGAGTCGAGGTCAGTGTCGATGAAATTTACGACGCTGTGGTGATTTGCAATGGGCATTATGTTGAGCCTCGAATTGCTCCAATTTCTGGAATCTCTACCTGGCCAGGAAAGCAGATGCATAGCCATAATTATCGGCTCCCTGAGCTGTTTCGAGATCAAGTCGTGGTTGTGATAGGGAATGCGGCAAGTGCTGTCGACATTTCACAGGACATCGCACGAGTCGCCAAAGAAGTCCATGTTTCGAGTCGATCTGCTCCCGGTGCATCATTCGGTCAAGACACCGAATTTTATACTAACATATGGCATCATCCAATGATCGAGAGAGTCCACGAGGATGGTAGTGTCGTGTTTGAAGACGGGGTCGCAATCGTCGTTGATGTCATTTTACACTGCACCGGGTACAAATACCATTTTCCATTTCTAGAAAGCAATGGCATCGTAAATGTAGACGACAATCGTGTGGGGCCGCTATACCAGCACGTCTTCCCCCCGGCTTTGGCTCCGTTTCTCTCCTTTGTCGGATTACCATGGAAGGTTGTTCCTTTTCCTTTGTTTGAATTCCAAAGCCGGTGGATTGCTCGGGTTTTGTCTGATCGAGTATTGCTCCCTTCGCCCGAGACGATGATGGACGATGTTGAGATGTTTTATGCGATGCTCGAAGCTTCTTCCACTCCGAAGCGATACACTCATAACCTGTCTCTCAATCAGTTTGAGTACACTGATTGGGTGGCCGAGCAGTGTGGGAGCCCGGCTACAGAAGAATGGAGGGTGAAGATGTACTCGGCTGCGTCGAGGAACAGGAGGGCTCGACCCATCACCTATCGGGACGAGTGGGATGACCAAGATTTGATTGCAGAAGCTCACCTCAATTTCAAGAATTGCATTACCAAAGCCGACCTCGTCAAAAACGACGATCATTCATCATATTTGTTGTAA 1425 50.04 MSVQTMPPITTLINRPIISRHVAVIGAGAAGLVAARELRREGHSVVVFEGCDQVGGSWVYTPKVDSDPLGSDPHRTVVNSSLYQSLRTNLPREVMGFRDYPFVDRSEESDRDCRRYPGHREVLMYLKDFSRDFRICELVRFETEVVFVSRENSGKWKVRSRNRGVEVSVDEIYDAVVICNGHYVEPRIAPISGISTWPGKQMHSHNYRLPELFRDQVVVVIGNAASAVDISQDIARVAKEVHVSSRSAPGASFGQDTEFYTNIWHHPMIERVHEDGSVVFEDGVAIVVDVILHCTGYKYHFPFLESNGIVNVDDNRVGPLYQHVFPPALAPFLSFVGLPWKVVPFPLFEFQSRWIARVLSDRVLLPSPETMMDDVEMFYAMLEASSTPKRYTHNLSLNQFEYTDWVAEQCGSPATEEWRVKMYSAASRNRRARPITYRDEWDDQDLIAEAHLNFKNCITKADLVKNDDHSSYLL 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4328207 4330466 + BLOR11352 Blo03g00171 57635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00171 474 Gene3D - 22 440 IPR036188 -
Blo03g00171 474 PIRSF FMO 18 251 IPR000960 GO:0050660|GO:0050661
Blo03g00171 474 PIRSF FMO 260 418 IPR000960 GO:0050660|GO:0050661
Blo03g00171 474 SUPERFAMILY FAD/NAD(P)-binding domain 20 247 IPR036188 -
Blo03g00171 474 SUPERFAMILY FAD/NAD(P)-binding domain 270 445 IPR036188 -
Blo03g00171 474 Gene3D - 190 294 IPR036188 -
Blo03g00171 474 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 15 456 - -
Blo03g00171 474 Pfam Flavin-binding monooxygenase-like 267 405 IPR020946 GO:0004499|GO:0050660|GO:0050661
Blo03g00171 474 Pfam Flavin-binding monooxygenase-like 20 247 IPR020946 GO:0004499|GO:0050660|GO:0050661
Blo03g00171 474 PRINTS Flavin-containing monooxygenase (FMO) signature 20 36 IPR000960 GO:0050660|GO:0050661
Blo03g00171 474 PRINTS Flavin-containing monooxygenase (FMO) signature 202 216 IPR000960 GO:0050660|GO:0050661
Blo03g00171 474 PRINTS Flavin-containing monooxygenase (FMO) signature 346 359 IPR000960 GO:0050660|GO:0050661
Blo03g00171 474 PRINTS Flavin-containing monooxygenase (FMO) signature 44 68 IPR000960 GO:0050660|GO:0050661
Blo03g00171 474 PRINTS Flavin-containing monooxygenase (FMO) signature 229 244 IPR000960 GO:0050660|GO:0050661
Blo03g00171 474 PRINTS Flavin-containing monooxygenase (FMO) signature 281 308 IPR000960 GO:0050660|GO:0050661
Blo03g00171 474 PANTHER DIMETHYLANILINE MONOOXYGENASE 15 456 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00171 - - - mdm:103437131 608.601
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00171 Blo-Chr3:4328207 Blo04g00784 Blo-Chr4:7795788 2.34E-131 dispersed
Blo03g00171 Blo-Chr3:4328207 Blo07g01058 Blo-Chr7:30413721 2.05E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g507 . Blo03g00171 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g02605 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy06g02024 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002306 0 0 1 1 1 3 2 1 2 4 1 1 2 4 4 2 1 1 2 2 1 2 1 4 2 2 1 4 1 5 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00171 Blo_Chr03 FPKM 5.210739 6.515608 8.315281 8.701064 13.641466 14.690723 16.237526 8.205003 9.004015 7.885116