Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00173 ATGGACTTGAAGTCAACTCATGCTTCTCCTGTTCTTACTGATCCTACACCCATGAACAAGTCAAGACTAGGTGTTCCCTCTACTCTGTTGCCTTGCTCTCCGCAAAGTTCACCCTTTTCCGCTGGGAAATATATTTCAATTCCAAGGAAAAAGACAGGAAAGCTTGATGATGTTTTGACTAATGGATGGTTAGATGCGATGCTATCTTCTTCGCCTCCCAGGAAGAAGCTAATTAAGGATTTAAATGTTGAAGCTGCTTTAGATGATTTTGACATTGCTTACAGCAACTGGACGCTTAAGCACCCATCAGCACTTAATAATTTCGAACAAATCATAAATTTTGCAAAGGATAAAAAGATAGCCATGTTTTTGGATTACGATGGGACACTTTCTCCCATAGTAGATGATCCAGATTGTGCAATTATGTCAGAGGCGATGCGAAGCGTTGTCAAAGACATCGCCAAGAATTTTCCAACCGCTATAATAAGCGGAAGAAGCCGTGATAAGGTTTATGAATTGGTTGGACTAACAGAACTGTATTATGCTGGTAGTCACGGGATGGATATCTTGGGCCCTGTAAGTCAAGCAGCCCTCAGTGACCATCCAAATTGTATTAGACCTTCTGACCATAAGGGCGAGGATGTTAATTTATTTCAGCCAGCCAGGGAATTTTTACCTGTGATTGACGAGCAGACTGGAGTGAATGATTTTGCAGGCGTAGTGATATGGATGACTAATGATGTTAATGGCAATTGGACTGCTGTAGCACAATGTGTTCATGATGTTCTGAATAACTATCCTCGATTGCGATTGACGCATGGACGGAAGGTTTTAGAAGTTCGTCCTGGGATAGACTGGAACAAGGGAAAAGCAGTTGAATTTTTGCTTGAATCTCTTGGGCTAAATACCAGCGATGATGTGATCCCTATCTATATTGGTGACGATAGGACCGACGAAGATGCATTCAAGGTGTTGCAAGAGAGAAATCAAGGCTTTGGAATCTTAGTGTCTTCTGTCCCCAAAGAAACCAAAGCATTTTACTCTCTCAAGGATCCCTCTGAGTTTTGTTTAGGTTCCATCAACTTTGTTGATTTCGAGCTTGTTCTCGAGATTGTTGCGCTAGGCGATAAGAAGGGCAACTGTTGTCGAGGGGGACCCCCTATTTCAGAAGAGCGGGGGAGGTTGAACCCCTCATTCTCTTTCCCTCTCCTTCTCCTTGTGAAAATTGTTCATCTCTGGGAAGTCGATGGTGCGAAAGAGGTGGGTTCTCCGACGGGTTGGCAACCTTGTTCATCGCTGAGGATGCTGGAGGTCGGGAAGAGATTTCCTACTGGAAATTTTGGCCTTGTGACTAGAGCAACTTGGTCCACAGACCAGAATGTTCTGGGCCGAACTCAAGCCCAGTTTTAG 1410 43.9 MDLKSTHASPVLTDPTPMNKSRLGVPSTLLPCSPQSSPFSAGKYISIPRKKTGKLDDVLTNGWLDAMLSSSPPRKKLIKDLNVEAALDDFDIAYSNWTLKHPSALNNFEQIINFAKDKKIAMFLDYDGTLSPIVDDPDCAIMSEAMRSVVKDIAKNFPTAIISGRSRDKVYELVGLTELYYAGSHGMDILGPVSQAALSDHPNCIRPSDHKGEDVNLFQPAREFLPVIDEQTGVNDFAGVVIWMTNDVNGNWTAVAQCVHDVLNNYPRLRLTHGRKVLEVRPGIDWNKGKAVEFLLESLGLNTSDDVIPIYIGDDRTDEDAFKVLQERNQGFGILVSSVPKETKAFYSLKDPSEFCLGSINFVDFELVLEIVALGDKKGNCCRGGPPISEERGRLNPSFSFPLLLLVKIVHLWEVDGAKEVGSPTGWQPCSSLRMLEVGKRFPTGNFGLVTRATWSTDQNVLGRTQAQF 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4345450 4350005 + BLOR11354 Blo03g00173 57637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00173 469 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 355 IPR044651 GO:0004805|GO:0005992
Blo03g00173 469 TIGRFAM T6PP: trehalose-phosphatase 118 354 IPR003337 GO:0003824|GO:0005992
Blo03g00173 469 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE F-RELATED 1 355 - -
Blo03g00173 469 Pfam Trehalose-phosphatase 123 353 IPR003337 GO:0003824|GO:0005992
Blo03g00173 469 SUPERFAMILY HAD-like 121 355 IPR036412 -
Blo03g00173 469 MobiDBLite consensus disorder prediction 1 22 - -
Blo03g00173 469 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 122 326 IPR006379 -
Blo03g00173 469 Gene3D - 120 204 IPR023214 -
Blo03g00173 469 Gene3D - 252 358 IPR023214 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00173 K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] - vvi:100852434 518.079
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00173 Blo-Chr3:4345450 Blo09g00148 Blo-Chr9:4049352 2.82E-153 dispersed
Blo15g00133 Blo-Chr15:1205252 Blo03g00173 Blo-Chr3:4345450 4.26E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g499 . Blo03g00173 Bda06g01308 . . Bpe07g00160 . . Cmo06g00785 Cmo16g01108 . . . . . Cpe14g00877 . . . . . . . . Cla10g00284 Cam10g0295 Cec10g0302 Cco10g0298 Clacu10g0294 Cmu10g1133 Cre10g0541 . . . . Lsi07g01330 . . Cme06g02612 . . . . . . Bma05g00775 . . . . Cma06g00764 Cma16g01058 Car06g00683 Car16g01007 Cpe08g00753 . . . . . . . . . . . . . . . . Csa03g00303 Chy06g02019 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000914 2 2 2 3 3 3 4 3 3 2 3 3 4 2 2 4 3 5 4 3 2 2 2 2 2 3 2 6 3 2 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00173 Blo_Chr03 FPKM 25.699883 29.140572 31.084728 35.611496 37.748466 37.213634 40.929199 58.085136 56.070175 63.463451